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  5. MA_6883323g0010

MA_6883323g0010


Description : (at3g07490 : 102.0) A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.; ARF-GAP domain 11 (AGD11); FUNCTIONS IN: calcium ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Parvalbumin (InterPro:IPR008080), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT2G43290.1); Has 25143 Blast hits to 16842 proteins in 1503 species: Archae - 3; Bacteria - 170; Metazoa - 10890; Fungi - 4135; Plants - 6085; Viruses - 0; Other Eukaryotes - 3860 (source: NCBI BLink). & (reliability: 204.0) & (original description: no original description)


Gene families : OG_42_0000821 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000821_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_6883323g0010
Cluster HCCA clusters: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
At3g07490 No alias CML3 [Source:UniProtKB/TrEMBL;Acc:A0A178V7U1] 0.05 Orthogroups_2024-Update
Glyma.04G245000 No alias Calcium-binding EF-hand family protein 0.04 Orthogroups_2024-Update
Mp6g20440.1 No alias Probable calcium-binding protein CML22 OS=Oryza sativa... 0.03 Orthogroups_2024-Update
Potri.002G077300 No alias Calcium-binding EF-hand family protein 0.06 Orthogroups_2024-Update
Potri.018G127100 No alias Calcium-binding EF-hand family protein 0.02 Orthogroups_2024-Update
Sobic.006G131600.1 No alias calcium sensor *(CML) 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Predicted GO
MF GO:0004602 glutathione peroxidase activity IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 6 70
No external refs found!