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Description : (at5g04810 : 163.0) pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Pentatricopeptide repeat (InterPro:IPR002885), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G05670.2); Has 66261 Blast hits to 20285 proteins in 585 species: Archae - 7; Bacteria - 408; Metazoa - 3695; Fungi - 2485; Plants - 56206; Viruses - 140; Other Eukaryotes - 3320 (source: NCBI BLink). & (reliability: 326.0) & (original description: no original description)
Gene families : OG_42_0006730 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006730_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Picea release: MA_70567g0010 | |
| Cluster | HCCA clusters: Cluster_241 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000160 | phosphorelay signal transduction system | IEP | Predicted GO |
| MF | GO:0003677 | DNA binding | IEP | Predicted GO |
| MF | GO:0003690 | double-stranded DNA binding | IEP | Predicted GO |
| MF | GO:0003905 | alkylbase DNA N-glycosylase activity | IEP | Predicted GO |
| MF | GO:0004356 | glutamate-ammonia ligase activity | IEP | Predicted GO |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0006259 | DNA metabolic process | IEP | Predicted GO |
| BP | GO:0006281 | DNA repair | IEP | Predicted GO |
| BP | GO:0006284 | base-excision repair | IEP | Predicted GO |
| BP | GO:0006298 | mismatch repair | IEP | Predicted GO |
| BP | GO:0006352 | DNA-templated transcription, initiation | IEP | Predicted GO |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Predicted GO |
| MF | GO:0008725 | DNA-3-methyladenine glycosylase activity | IEP | Predicted GO |
| MF | GO:0016211 | ammonia ligase activity | IEP | Predicted GO |
| MF | GO:0016799 | hydrolase activity, hydrolyzing N-glycosyl compounds | IEP | Predicted GO |
| MF | GO:0016879 | ligase activity, forming carbon-nitrogen bonds | IEP | Predicted GO |
| MF | GO:0016880 | acid-ammonia (or amide) ligase activity | IEP | Predicted GO |
| MF | GO:0019104 | DNA N-glycosylase activity | IEP | Predicted GO |
| MF | GO:0019239 | deaminase activity | IEP | Predicted GO |
| CC | GO:0019867 | outer membrane | IEP | Predicted GO |
| MF | GO:0030983 | mismatched DNA binding | IEP | Predicted GO |
| BP | GO:0033554 | cellular response to stress | IEP | Predicted GO |
| BP | GO:0035556 | intracellular signal transduction | IEP | Predicted GO |
| MF | GO:0043733 | DNA-3-methylbase glycosylase activity | IEP | Predicted GO |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
| BP | GO:0050789 | regulation of biological process | IEP | Predicted GO |
| BP | GO:0050794 | regulation of cellular process | IEP | Predicted GO |
| BP | GO:0051716 | cellular response to stimulus | IEP | Predicted GO |
| BP | GO:0065007 | biological regulation | IEP | Predicted GO |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 4 | 58 |
| No external refs found! |