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  5. MA_71104g0010

MA_71104g0010


Description : (at3g12770 : 623.0) Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing.; mitochondrial editing factor 22 (MEF22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 43523 Blast hits to 14475 proteins in 290 species: Archae - 0; Bacteria - 15; Metazoa - 148; Fungi - 158; Plants - 42447; Viruses - 0; Other Eukaryotes - 755 (source: NCBI BLink). & (q76c99|rf1_orysa : 108.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1124.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_71104g0010
Cluster HCCA clusters: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
106991 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
131810 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
134463 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
84339 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
85415 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
98955 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
AC203841.3_FG002 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
At5g59200 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Orthogroups_2024-Update
Bradi1g38705 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g47170 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Brara.F01619.1 No alias RNA editing factor *(ECD1) 0.04 Orthogroups_2024-Update
Brara.I01685.1 No alias RNA editing factor *(PGN) 0.02 Orthogroups_2024-Update
GRMZM2G158839 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.15G156600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os05g12130 No alias EMB2261, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00002641-RA No alias (at1g11290 : 548.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00003812-RA No alias (at2g13600 : 494.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00004138-RA No alias (at1g11290 : 633.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00016877-RA No alias (at4g13650 : 622.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00025196-RA No alias (at3g03580 : 681.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00036495-RA No alias (at1g11290 : 559.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00037497-RA No alias (at4g13650 : 692.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
PSME_00039458-RA No alias (at4g13650 : 677.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00045217-RA No alias (at4g18750 : 610.0) Encodes a pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
PSME_00048581-RA No alias (at4g02750 : 590.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00052953-RA No alias (at4g13650 : 635.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00056368-RA No alias (at1g11290 : 697.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
Potri.017G083900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.018G071800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Pp1s169_110V6 No alias T12J13.14; pentatricopeptide (PPR) repeat-containing... 0.02 Orthogroups_2024-Update
Seita.2G001800.1 No alias RNA editing factor *(ELI1) 0.02 Orthogroups_2024-Update
Seita.2G203900.1 No alias RNA editing factor *(OTP87) 0.03 Orthogroups_2024-Update
Seita.5G176900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.7G131800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G016100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G246800.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.009G250700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G153600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc01g090510 No alias Pentatricopeptide repeat-containing protein, putative... 0.03 Orthogroups_2024-Update
Solyc04g063270 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc05g023900 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen05g018650 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen09g004700 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen11g006690 No alias PPR repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 75 122
IPR002885 Pentatricopeptide_repeat 378 425
IPR002885 Pentatricopeptide_repeat 176 223
IPR002885 Pentatricopeptide_repeat 277 323
IPR032867 DYW_dom 551 676
IPR002885 Pentatricopeptide_repeat 453 476
No external refs found!