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  5. Solyc10g081920

Solyc10g081920


Description : Coatomer subunit beta (AHRD V3.3 *** M1CQJ9_SOLTU)


Gene families : OG_42_0003181 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003181_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc10g081920
Cluster HCCA clusters: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
A4A49_19463 No alias coatomer subunit beta-1 0.03 Orthogroups_2024-Update
Bradi2g10910 No alias Coatomer, beta subunit 0.02 Orthogroups_2024-Update
Bradi2g10950 No alias Coatomer, beta subunit 0.04 Orthogroups_2024-Update
Cre04.g217921 No alias Coatomer, beta subunit 0.03 Orthogroups_2024-Update
Glyma.08G222400 No alias Coatomer, beta subunit 0.02 Orthogroups_2024-Update
Kfl00013_0310 kfl00013_0310_v1.1 (at4g31480 : 1299.0) Coatomer, beta subunit; FUNCTIONS... 0.02 Orthogroups_2024-Update
Potri.018G007400 No alias Coatomer, beta subunit 0.03 Orthogroups_2024-Update
Pp1s168_28V6 No alias coatomer subunit beta 0.03 Orthogroups_2024-Update
Pp1s309_15V6 No alias coatomer subunit beta 0.04 Orthogroups_2024-Update
Pp1s42_100V6 No alias coatomer subunit beta 0.05 Orthogroups_2024-Update
Seita.5G038000.1 No alias subunit beta of cargo adaptor F-subcomplex 0.03 Orthogroups_2024-Update
Seita.5G398100.1 No alias subunit beta of cargo adaptor F-subcomplex 0.05 Orthogroups_2024-Update
Sopen01g003130 No alias Adaptin N terminal region 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA InterProScan predictions
BP GO:0006886 intracellular protein transport IEA InterProScan predictions
BP GO:0016192 vesicle-mediated transport IEA InterProScan predictions
CC GO:0030117 membrane coat IEA InterProScan predictions
CC GO:0030126 COPI vesicle coat IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
MF GO:0004476 mannose-6-phosphate isomerase activity IEP Predicted GO
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
CC GO:0005956 protein kinase CK2 complex IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006098 pentose-phosphate shunt IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0006739 NADP metabolic process IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
BP GO:0006904 vesicle docking involved in exocytosis IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
MF GO:0019207 kinase regulator activity IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
MF GO:0019887 protein kinase regulator activity IEP Predicted GO
BP GO:0022406 membrane docking IEP Predicted GO
CC GO:0030118 clathrin coat IEP Predicted GO
CC GO:0030125 clathrin vesicle coat IEP Predicted GO
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Predicted GO
CC GO:0030132 clathrin coat of coated pit IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
BP GO:0048278 vesicle docking IEP Predicted GO
BP GO:0051156 glucose 6-phosphate metabolic process IEP Predicted GO
BP GO:0051640 organelle localization IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
BP GO:0140029 exocytic process IEP Predicted GO
BP GO:0140056 organelle localization by membrane tethering IEP Predicted GO
InterPro domains Description Start Stop
IPR029446 COPB1_appendage_platform_dom 813 940
IPR002553 Clathrin/coatomer_adapt-like_N 21 466
IPR011710 Coatomer_bsu_C 669 807
No external refs found!