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  5. Solyc10g083820

Solyc10g083820


Description : Pectinesterase (AHRD V3.3 *** A0A068V420_COFCA)


Gene families : OG_42_0000087 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000087_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc10g083820
Cluster HCCA clusters: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
Glyma.07G125100 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G262500 No alias pectin methylesterase 31 0.04 Orthogroups_2024-Update
LOC_Os09g39760 No alias pectinesterase, putative, expressed 0.02 Orthogroups_2024-Update
Mp2g19430.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005618 cell wall IEA InterProScan predictions
MF GO:0030599 pectinesterase activity IEA InterProScan predictions
BP GO:0042545 cell wall modification IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0015002 heme-copper terminal oxidase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 15 305
No external refs found!