Description : (at5g50920 : 620.0) Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.; CLPC homologue 1 (CLPC1); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity, ATP binding; INVOLVED IN: protein import into chloroplast stroma, regulation of chlorophyll biosynthetic process, protein targeting to chloroplast, chloroplast organization; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp ATPase (TAIR:AT3G48870.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p35100|clpc_pea : 614.0) ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplast precursor - Pisum sativum (Garden pea) & (reliability: 1240.0) & (original description: no original description)
Gene families : OG_42_0000227 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000227_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_8117g0010 | |
Cluster | HCCA clusters: Cluster_80 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
411118 | No alias | casein lytic proteinase B3 | 0.03 | Orthogroups_2024-Update | |
Bradi3g44335 | No alias | CLPC homologue 1 | 0.03 | Orthogroups_2024-Update | |
Bradi3g44341 | No alias | CLPC homologue 1 | 0.04 | Orthogroups_2024-Update | |
Cre11.g467575 | No alias | casein lytic proteinase B3 | 0.01 | Orthogroups_2024-Update | |
Cre12.g533351 | No alias | heat shock protein 101 | 0.02 | Orthogroups_2024-Update | |
Cre43.g760497 | No alias | CLPC homologue 1 | 0.02 | Orthogroups_2024-Update | |
GRMZM2G373849 | No alias | CLPC homologue 1 | 0.02 | Orthogroups_2024-Update | |
HORVU4Hr1G090440.2 | No alias | organellar chaperone *(Clp-p/Clp-m) | 0.04 | Orthogroups_2024-Update | |
HORVU6Hr1G028690.3 | No alias | organellar chaperone *(Clp-p/Clp-m) | 0.04 | Orthogroups_2024-Update | |
LOC_Os03g31300 | No alias | chaperone protein clpB 1, putative, expressed | 0.03 | Orthogroups_2024-Update | |
LOC_Os05g44340 | No alias | heat shock protein 101, putative, expressed | 0.02 | Orthogroups_2024-Update | |
PSME_00014106-RA | No alias | (at5g15450 : 850.0) Encodes a chloroplast-targeted... | 0.07 | Orthogroups_2024-Update | |
PSME_00036597-RA | No alias | (at5g50920 : 1365.0) Encodes a protein that is similar... | 0.05 | Orthogroups_2024-Update | |
Potri.015G105100 | No alias | CLPC homologue 1 | 0.03 | Orthogroups_2024-Update | |
Potri.017G090600 | No alias | casein lytic proteinase B3 | 0.03 | Orthogroups_2024-Update | |
Pp1s23_102V6 | No alias | atpase aaa-2 domain protein | 0.02 | Orthogroups_2024-Update | |
Pp1s252_87V6 | No alias | atpase aaa-2 domain protein | 0.02 | Orthogroups_2024-Update | |
Pp1s81_51V6 | No alias | atpase aaa-2 domain protein | 0.02 | Orthogroups_2024-Update | |
evm.model.contig_3516.2 | No alias | (at1g74310 : 794.0) Encodes ClpB1, which belongs to the... | 0.02 | Orthogroups_2024-Update | |
evm.model.tig00000655.28 | No alias | (at5g50920 : 1134.0) Encodes a protein that is similar... | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005524 | ATP binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000272 | polysaccharide catabolic process | IEP | Predicted GO |
BP | GO:0001522 | pseudouridine synthesis | IEP | Predicted GO |
MF | GO:0001882 | nucleoside binding | IEP | Predicted GO |
MF | GO:0001883 | purine nucleoside binding | IEP | Predicted GO |
MF | GO:0003924 | GTPase activity | IEP | Predicted GO |
MF | GO:0004222 | metalloendopeptidase activity | IEP | Predicted GO |
MF | GO:0004497 | monooxygenase activity | IEP | Predicted GO |
MF | GO:0004527 | exonuclease activity | IEP | Predicted GO |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Predicted GO |
MF | GO:0004813 | alanine-tRNA ligase activity | IEP | Predicted GO |
MF | GO:0005525 | GTP binding | IEP | Predicted GO |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Predicted GO |
BP | GO:0006419 | alanyl-tRNA aminoacylation | IEP | Predicted GO |
BP | GO:0006520 | cellular amino acid metabolic process | IEP | Predicted GO |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
MF | GO:0008237 | metallopeptidase activity | IEP | Predicted GO |
MF | GO:0008408 | 3'-5' exonuclease activity | IEP | Predicted GO |
BP | GO:0009451 | RNA modification | IEP | Predicted GO |
MF | GO:0009982 | pseudouridine synthase activity | IEP | Predicted GO |
MF | GO:0010277 | chlorophyllide a oxygenase [overall] activity | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
MF | GO:0016160 | amylase activity | IEP | Predicted GO |
MF | GO:0016161 | beta-amylase activity | IEP | Predicted GO |
MF | GO:0016462 | pyrophosphatase activity | IEP | Predicted GO |
MF | GO:0016703 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) | IEP | Predicted GO |
MF | GO:0016787 | hydrolase activity | IEP | Predicted GO |
MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Predicted GO |
MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Predicted GO |
MF | GO:0016866 | intramolecular transferase activity | IEP | Predicted GO |
MF | GO:0016874 | ligase activity | IEP | Predicted GO |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Predicted GO |
BP | GO:0017038 | protein import | IEP | Predicted GO |
MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Predicted GO |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Predicted GO |
MF | GO:0032549 | ribonucleoside binding | IEP | Predicted GO |
MF | GO:0032550 | purine ribonucleoside binding | IEP | Predicted GO |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Predicted GO |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
BP | GO:0043038 | amino acid activation | IEP | Predicted GO |
BP | GO:0043039 | tRNA aminoacylation | IEP | Predicted GO |
BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
MF | GO:0050662 | coenzyme binding | IEP | Predicted GO |
MF | GO:0051536 | iron-sulfur cluster binding | IEP | Predicted GO |
MF | GO:0051537 | 2 iron, 2 sulfur cluster binding | IEP | Predicted GO |
MF | GO:0051540 | metal cluster binding | IEP | Predicted GO |
MF | GO:0070569 | uridylyltransferase activity | IEP | Predicted GO |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Predicted GO |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Predicted GO |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
No external refs found! |