Description : (at4g13650 : 633.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G16480.1); Has 61118 Blast hits to 14026 proteins in 284 species: Archae - 2; Bacteria - 18; Metazoa - 154; Fungi - 167; Plants - 59907; Viruses - 0; Other Eukaryotes - 870 (source: NCBI BLink). & (q76c99|rf1_orysa : 105.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1266.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_84538g0010 | |
Cluster | HCCA clusters: Cluster_234 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
81625 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.07 | Orthogroups_2024-Update | |
Glyma.01G011700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.07G068800 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
PSME_00001341-RA | No alias | (at1g20230 : 694.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
PSME_00003011-RA | No alias | (at4g18750 : 444.0) Encodes a pentatricopeptide (PPR)... | 0.05 | Orthogroups_2024-Update | |
PSME_00006107-RA | No alias | (at1g11290 : 668.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
PSME_00006334-RA | No alias | (at3g23330 : 550.0) Tetratricopeptide repeat (TPR)-like... | 0.05 | Orthogroups_2024-Update | |
PSME_00024048-RA | No alias | (at2g03880 : 422.0) Pentatricopeptide repeat (PPR)... | 0.07 | Orthogroups_2024-Update | |
PSME_00031833-RA | No alias | (at3g13770 : 501.0) Pentatricopeptide repeat (PPR)... | 0.05 | Orthogroups_2024-Update | |
PSME_00045217-RA | No alias | (at4g18750 : 610.0) Encodes a pentatricopeptide (PPR)... | 0.04 | Orthogroups_2024-Update | |
Sobic.001G282300.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0015267 | channel activity | IEP | Predicted GO |
MF | GO:0022803 | passive transmembrane transporter activity | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 353 | 400 |
IPR002885 | Pentatricopeptide_repeat | 252 | 299 |
IPR002885 | Pentatricopeptide_repeat | 555 | 602 |
IPR002885 | Pentatricopeptide_repeat | 151 | 198 |
IPR002885 | Pentatricopeptide_repeat | 454 | 501 |
IPR032867 | DYW_dom | 728 | 852 |
IPR002885 | Pentatricopeptide_repeat | 630 | 653 |
IPR002885 | Pentatricopeptide_repeat | 695 | 724 |
IPR002885 | Pentatricopeptide_repeat | 530 | 554 |
No external refs found! |