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  5. Solyc10g085020

Solyc10g085020


Description : Tubulin beta chain (AHRD V3.3 *** M1ARQ6_SOLTU)


Gene families : OG_42_0000212 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000212_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc10g085020
Cluster HCCA clusters: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
Cre12.g542250 No alias tubulin beta chain 2 0.02 Orthogroups_2024-Update
Cre12.g549550 No alias tubulin beta chain 2 0.02 Orthogroups_2024-Update
Glyma.20G159200 No alias tubulin beta 8 0.05 Orthogroups_2024-Update
HORVU6Hr1G027620.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Kfl00215_0170 kfl00215_0170_v1.1 (p04690|tbb_chlre : 825.0) Tubulin beta-1/beta-2 chain -... 0.03 Orthogroups_2024-Update
Mp1g20730.1 No alias component beta-Tubulin of alpha-beta-Tubulin heterodimer 0.02 Orthogroups_2024-Update
Potri.003G125400 No alias tubulin beta 8 0.04 Orthogroups_2024-Update
Potri.009G040200 No alias tubulin beta 8 0.03 Orthogroups_2024-Update
Pp1s252_101V6 No alias tubulin beta 0.03 Orthogroups_2024-Update
evm.model.contig_2073.5 No alias (p37832|tbb7_orysa : 682.0) Tubulin beta-7 chain (Beta-7... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006366 transcription by RNA polymerase II IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
InterPro domains Description Start Stop
IPR003008 Tubulin_FtsZ_GTPase 3 211
IPR018316 Tubulin/FtsZ_2-layer-sand-dom 261 381
No external refs found!