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  5. MA_865576g0010

MA_865576g0010


Description : (p50567|h2a_chlre : 138.0) Histone H2A - Chlamydomonas reinhardtii & (at1g51060 : 132.0) Encodes HTA10, a histone H2A protein.; histone H2A 10 (HTA10); FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H2A 13 (TAIR:AT3G20670.1); Has 3904 Blast hits to 3899 proteins in 361 species: Archae - 0; Bacteria - 0; Metazoa - 2554; Fungi - 302; Plants - 612; Viruses - 4; Other Eukaryotes - 432 (source: NCBI BLink). & (reliability: 264.0) & (original description: no original description)


Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_865576g0010
Cluster HCCA clusters: Cluster_270

Target Alias Description ECC score Gene Family Method Actions
Cre06.g265350 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Cre06.g266700 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre06.g268050 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre06.g274800 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Cre12.g504750 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre17.g708550 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre17.g711700 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Cre17.g713400 No alias histone H2A 10 0.02 Orthogroups_2024-Update
GRMZM2G041381 No alias histone H2A 2 0.03 Orthogroups_2024-Update
Glyma.13G333900 No alias histone H2A 12 0.05 Orthogroups_2024-Update
HORVU4Hr1G058810.1 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
HORVU7Hr1G100400.2 No alias histone *(H2A) 0.05 Orthogroups_2024-Update
Kfl00099_g21 kfl00099_g21_v1.1 (q2qpg9|h2axb_orysa : 166.0) Probable histone H2AXb -... 0.02 Orthogroups_2024-Update
MA_22203g0020 No alias (at5g54640 : 145.0) Isolated from T-DNA insertion line,... 0.03 Orthogroups_2024-Update
MA_427046g0010 No alias (q84nj4|h2a3_orysa : 144.0) Probable histone H2A.3 -... 0.03 Orthogroups_2024-Update
Mp3g00840.1 No alias histone (H2A) 0.02 Orthogroups_2024-Update
Mp4g21750.1 No alias histone (H2A) 0.03 Orthogroups_2024-Update
PSME_00008214-RA No alias (q75l11|h2a6_orysa : 120.0) Probable histone H2A.6 -... 0.04 Orthogroups_2024-Update
PSME_00015856-RA No alias (q84nj4|h2a3_orysa : 144.0) Probable histone H2A.3 -... 0.04 Orthogroups_2024-Update
Potri.006G082300 No alias histone H2A 12 0.03 Orthogroups_2024-Update
Seita.5G370700.1 No alias histone *(H2A) 0.06 Orthogroups_2024-Update
Sopen10g002510 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen11g030880 No alias Core histone H2A/H2B/H3/H4 0.02 Orthogroups_2024-Update
Sopen12g001250 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 18 96
IPR032454 Histone_H2A_C 99 132
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