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  5. MA_88982g0010

MA_88982g0010


Description : (at5g11300 : 380.0) mitotic-like cyclin, core cell cycle gene that is expressed only in roots (RT_PCR), portions with mitotic activity only (whole mount in situ).; mitotic-like cyclin 3B from Arabidopsis (CYC3B); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin (InterPro:IPR006670), G2/mitotic-specific cyclin A (InterPro:IPR015453), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400); BEST Arabidopsis thaliana protein match is: cyclin a2;1 (TAIR:AT5G25380.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p25010|ccnal_dauca : 313.0) G2/mitotic-specific cyclin C13-1 (A-like cyclin) (Fragment) - Daucus carota (Carrot) & (reliability: 760.0) & (original description: no original description)


Gene families : OG_42_0000120 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_88982g0010
Cluster HCCA clusters: Cluster_243

Target Alias Description ECC score Gene Family Method Actions
230742 No alias CYCLIN B2;4 0.02 Orthogroups_2024-Update
97411 No alias Cyclin A1;1 0.04 Orthogroups_2024-Update
A4A49_05961 No alias g2mitotic-specific cyclin-1 0.03 Orthogroups_2024-Update
A4A49_35953 No alias g2mitotic-specific cyclin s13-6 0.03 Orthogroups_2024-Update
A4A49_40931 No alias g2mitotic-specific cyclin s13-6 0.04 Orthogroups_2024-Update
At1g44110 No alias CYCA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0H5] 0.04 Orthogroups_2024-Update
At2g26760 No alias CYCB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VPU5] 0.03 Orthogroups_2024-Update
At4g35620 No alias Cyclin-B2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39070] 0.06 Orthogroups_2024-Update
At4g37490 No alias Cyclin-B1-1 [Source:UniProtKB/Swiss-Prot;Acc:P30183] 0.03 Orthogroups_2024-Update
Brara.A03403.1 No alias regulatory protein *(CYCB) of cell cycle 0.03 Orthogroups_2024-Update
Brara.B00199.1 No alias regulatory protein *(CYCB) of cell cycle 0.04 Orthogroups_2024-Update
Brara.C00237.1 No alias regulatory protein *(CYCB) of cell cycle 0.06 Orthogroups_2024-Update
Brara.E01867.1 No alias regulatory protein *(TAM) involved in metaphase to... 0.03 Orthogroups_2024-Update
Brara.F03824.1 No alias regulatory protein *(CYCA) of cell cycle 0.03 Orthogroups_2024-Update
Brara.G00692.1 No alias regulatory protein *(CYCB) of cell cycle 0.03 Orthogroups_2024-Update
Brara.H00423.1 No alias regulatory protein *(CYCA) of cell cycle 0.03 Orthogroups_2024-Update
Cre03.g207900 No alias Cyclin A2;4 0.02 Orthogroups_2024-Update
GRMZM5G879536 No alias CYCLIN A2;3 0.03 Orthogroups_2024-Update
Glyma.01G159700 No alias Cyclin B2;3 0.05 Orthogroups_2024-Update
Glyma.02G277600 No alias Cyclin family protein 0.07 Orthogroups_2024-Update
Glyma.03G123600 No alias Cyclin family protein 0.06 Orthogroups_2024-Update
Glyma.04G001100 No alias Cyclin B2;3 0.06 Orthogroups_2024-Update
Glyma.04G043600 No alias Cyclin A3;1 0.04 Orthogroups_2024-Update
Glyma.04G071600 No alias mitotic-like cyclin 3B from Arabidopsis 0.04 Orthogroups_2024-Update
Glyma.04G246600 No alias Cyclin A1;1 0.04 Orthogroups_2024-Update
Glyma.06G000600 No alias Cyclin B2;3 0.04 Orthogroups_2024-Update
Glyma.06G043900 No alias CYCLIN A3;4 0.05 Orthogroups_2024-Update
Glyma.06G116100 No alias Cyclin A1;1 0.06 Orthogroups_2024-Update
Glyma.07G034100 No alias Cyclin A2;4 0.04 Orthogroups_2024-Update
Glyma.08G234900 No alias cyclin b3;1 0.04 Orthogroups_2024-Update
Glyma.11G084500 No alias Cyclin B2;3 0.04 Orthogroups_2024-Update
Glyma.13G031500 No alias Cyclin A1;1 0.05 Orthogroups_2024-Update
Glyma.14G037100 No alias Cyclin family protein 0.07 Orthogroups_2024-Update
Glyma.19G127200 No alias Cyclin family protein 0.07 Orthogroups_2024-Update
HORVU4Hr1G013320.1 No alias regulatory protein *(CYCA) of cell cycle 0.02 Orthogroups_2024-Update
HORVU5Hr1G018820.2 No alias regulatory protein *(CYCA) of cell cycle 0.02 Orthogroups_2024-Update
Kfl00112_0070 kfl00112_0070_v1.... (at1g80370 : 326.0) Cyclin A2;4 (CYCA2;4); CONTAINS... 0.03 Orthogroups_2024-Update
Kfl00560_0010 kfl00560_0010_v1.1 (at1g76310 : 298.0) core cell cycle genes; CYCLIN B2;4... 0.01 Orthogroups_2024-Update
LOC_Os01g59120 No alias cyclin, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g51110 No alias cyclin, putative, expressed 0.03 Orthogroups_2024-Update
Mp5g10030.1 No alias cyclin (CYCB) 0.03 Orthogroups_2024-Update
PSME_00001614-RA No alias (p34800|ccn1_antma : 345.0) G2/mitotic-specific cyclin-1... 0.04 Orthogroups_2024-Update
PSME_00018743-RA No alias (p30278|ccnb2_medsa : 274.0) G2/mitotic-specific... 0.01 Orthogroups_2024-Update
PSME_00031489-RA No alias (at5g11300 : 338.0) mitotic-like cyclin, core cell cycle... 0.05 Orthogroups_2024-Update
PSME_00031546-RA No alias (at1g44110 : 410.0) Cyclin A1;1 (CYCA1;1); CONTAINS... 0.08 Orthogroups_2024-Update
Potri.002G010000 No alias CYCLIN B2;4 0.03 Orthogroups_2024-Update
Potri.006G035200 No alias Cyclin family protein 0.03 Orthogroups_2024-Update
Potri.006G247200 No alias cyclin a2;1 0.03 Orthogroups_2024-Update
Sobic.010G274000.3 No alias regulatory protein *(CYCB) of cell cycle 0.03 Orthogroups_2024-Update
Solyc01g009040 No alias cyclinB1_4 0.05 Orthogroups_2024-Update
Solyc03g032190 No alias cyclinB2_7 0.05 Orthogroups_2024-Update
Solyc04g078310 No alias cyclin A3_1 0.06 Orthogroups_2024-Update
Solyc04g082430 No alias cyclinB2_4 0.04 Orthogroups_2024-Update
Solyc06g065680 No alias cyclin A2 0.05 Orthogroups_2024-Update
Solyc07g066660 No alias cyclinB3_1 0.04 Orthogroups_2024-Update
Solyc10g078330 No alias B-type cyclin 0.04 Orthogroups_2024-Update
Solyc10g080950 No alias cyclinB1_2 0.04 Orthogroups_2024-Update
Solyc11g005090 No alias cyclin A1 0.06 Orthogroups_2024-Update
Solyc12g088470 No alias cyclin A3_4 0.05 Orthogroups_2024-Update
Solyc12g088500 No alias cyclin A3_5 0.06 Orthogroups_2024-Update
Solyc12g088520 No alias cyclin A3_3 0.03 Orthogroups_2024-Update
Solyc12g088530 No alias cyclin A3.1 0.03 Orthogroups_2024-Update
Sopen01g004530 No alias Cyclin, N-terminal domain 0.03 Orthogroups_2024-Update
Sopen03g006030 No alias Cyclin, N-terminal domain 0.03 Orthogroups_2024-Update
Sopen04g031900 No alias Cyclin, N-terminal domain 0.03 Orthogroups_2024-Update
Sopen04g036020 No alias Cyclin, N-terminal domain 0.06 Orthogroups_2024-Update
Sopen06g024200 No alias Cyclin, N-terminal domain 0.03 Orthogroups_2024-Update
Sopen10g031460 No alias Cyclin, N-terminal domain 0.03 Orthogroups_2024-Update
Sopen12g030490 No alias Cyclin, N-terminal domain 0.04 Orthogroups_2024-Update
Sopen12g031500 No alias Cyclin, N-terminal domain 0.04 Orthogroups_2024-Update
evm.model.contig_554.3 No alias (q40671|ccnb2_orysa : 240.0) G2/mitotic-specific... 0.04 Orthogroups_2024-Update
evm.model.tig00000076.67 No alias (at1g44110 : 156.0) Cyclin A1;1 (CYCA1;1); CONTAINS... 0.01 Orthogroups_2024-Update
evm.model.tig00000769.38 No alias (at1g76310 : 252.0) core cell cycle genes; CYCLIN B2;4... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0006275 regulation of DNA replication IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predicted GO
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
MF GO:0030599 pectinesterase activity IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
BP GO:0051052 regulation of DNA metabolic process IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071554 cell wall organization or biogenesis IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR006671 Cyclin_N 253 379
IPR004367 Cyclin_C-dom 382 502
No external refs found!