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  5. MA_9038g0010

MA_9038g0010


Description : (at2g17790 : 256.0) Encodes a protein with similarity to yeast VPS35 which encodes a component of the retromer involved in retrograde endosomal transport. Mutants partially suppress the loss of VTI11 function in Arabidopsis and restores gravitropism in the double mutant.; VPS35 homolog A (VPS35A); CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 35 (InterPro:IPR005378); BEST Arabidopsis thaliana protein match is: VPS35 homolog B (TAIR:AT1G75850.1); Has 618 Blast hits to 509 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 194; Fungi - 224; Plants - 73; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). & (reliability: 512.0) & (original description: no original description)


Gene families : OG_42_0002635 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002635_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Picea release: MA_9038g0010
Cluster HCCA clusters: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
Pp1s313_104V6 No alias vacuolar sorting protein 35 0.02 Orthogroups_2024-Update
Seita.9G051300.1 No alias component *(VPS35) of Retromer protein recycling complex 0.03 Orthogroups_2024-Update
Solyc02g083560 No alias Vacuolar protein sorting-associated protein 35 (AHRD... 0.03 Orthogroups_2024-Update
Solyc03g033400 No alias Vacuolar protein sorting-associated protein 35 (AHRD... 0.04 Orthogroups_2024-Update
evm.model.contig_3480.4 No alias (at1g75850 : 269.0) VPS35 homolog B (VPS35B); CONTAINS... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015031 protein transport IEA InterProScan predictions
CC GO:0030906 retromer, cargo-selective complex IEA InterProScan predictions
BP GO:0042147 retrograde transport, endosome to Golgi IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Predicted GO
MF GO:0004620 phospholipase activity IEP Predicted GO
MF GO:0004629 phospholipase C activity IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
BP GO:0007264 small GTPase mediated signal transduction IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0017025 TBP-class protein binding IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
BP GO:0035556 intracellular signal transduction IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR005378 Vps35 15 169
No external refs found!