Description : (at4g13650 : 664.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G16480.1); Has 61118 Blast hits to 14026 proteins in 284 species: Archae - 2; Bacteria - 18; Metazoa - 154; Fungi - 167; Plants - 59907; Viruses - 0; Other Eukaryotes - 870 (source: NCBI BLink). & (q76c99|rf1_orysa : 129.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1328.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_9258g0010 | |
Cluster | HCCA clusters: Cluster_47 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
328 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
A4A49_22283 | No alias | pentatricopeptide repeat-containing protein | 0.03 | Orthogroups_2024-Update | |
At4g31070 | No alias | Pentatricopeptide repeat-containing protein At4g31070,... | 0.03 | Orthogroups_2024-Update | |
Brara.F01963.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Brara.J01291.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
GRMZM2G154743 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.08G086500 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.08G213800 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
HORVU4Hr1G080660.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
LOC_Os03g64370 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
MA_83898g0010 | No alias | (at1g11290 : 636.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
PSME_00001944-RA | No alias | (at1g11290 : 488.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
PSME_00003874-RA | No alias | (at4g33170 : 590.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
PSME_00007181-RA | No alias | (at3g03580 : 567.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
PSME_00032006-RA | No alias | (at2g13600 : 367.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
PSME_00034399-RA | No alias | (at4g33170 : 426.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
PSME_00042881-RA | No alias | (at4g37170 : 685.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00046650-RA | No alias | (at4g21300 : 573.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
PSME_00056121-RA | No alias | (at4g13650 : 672.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00057187-RA | No alias | (at1g11290 : 659.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
Potri.001G186500 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.001G322100 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Potri.002G014800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.003G074500 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.004G059400 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.006G105700 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.006G245300 | No alias | Function unknown | 0.03 | Orthogroups_2024-Update | |
Potri.017G137200 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.018G040100 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.018G067500 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
Seita.2G031700.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.2G203900.1 | No alias | RNA editing factor *(OTP87) | 0.03 | Orthogroups_2024-Update | |
Seita.9G355700.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.9G477500.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.002G384800.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.010G232700.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Solyc03g051780 | No alias | Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G57790.2) | 0.03 | Orthogroups_2024-Update | |
Sopen01g015270 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen01g033110 | No alias | PPR repeat | 0.04 | Orthogroups_2024-Update | |
Sopen01g038950 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
Sopen03g028590 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen03g038010 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update | |
Sopen07g022420 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen09g033130 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen11g024970 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004527 | exonuclease activity | IEP | Predicted GO |
MF | GO:0004652 | polynucleotide adenylyltransferase activity | IEP | Predicted GO |
MF | GO:0015095 | magnesium ion transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0015693 | magnesium ion transport | IEP | Predicted GO |
BP | GO:0043631 | RNA polyadenylation | IEP | Predicted GO |
MF | GO:0070566 | adenylyltransferase activity | IEP | Predicted GO |
BP | GO:0070838 | divalent metal ion transport | IEP | Predicted GO |
BP | GO:0072511 | divalent inorganic cation transport | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 573 | 621 |
IPR002885 | Pentatricopeptide_repeat | 473 | 520 |
IPR002885 | Pentatricopeptide_repeat | 159 | 207 |
IPR002885 | Pentatricopeptide_repeat | 261 | 307 |
IPR002885 | Pentatricopeptide_repeat | 649 | 672 |
IPR002885 | Pentatricopeptide_repeat | 336 | 361 |
IPR002885 | Pentatricopeptide_repeat | 364 | 390 |
IPR002885 | Pentatricopeptide_repeat | 82 | 141 |
IPR032867 | DYW_dom | 747 | 871 |
No external refs found! |