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Description : (at5g22880 : 173.0) Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases.; histone B2 (HTB2); FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT3G45980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (o22582|h2b_goshi : 171.0) Histone H2B - Gossypium hirsutum (Upland cotton) & (reliability: 346.0) & (original description: no original description)
Gene families : OG_42_0000153 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000153_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Picea release: MA_9293473g0010 | |
| Cluster | HCCA clusters: Cluster_127 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Bradi1g08860 | No alias | Histone superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Bradi3g54520 | No alias | Histone superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Brara.J01445.1 | No alias | histone *(H2B) | 0.02 | Orthogroups_2024-Update | |
| Cre06.g264800 | No alias | Histone superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Cre06.g266750 | No alias | Histone superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Cre06.g271376 | No alias | Histone superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Cre06.g273850 | No alias | Histone superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Cre06.g274250 | No alias | Histone superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Cre06.g274750 | No alias | Histone superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Cre06.g275800 | No alias | Histone superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Cre06.g276900 | No alias | Histone superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Cre12.g504550 | No alias | Histone superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Cre12.g504700 | No alias | Histone superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Cre12.g506200 | No alias | Histone superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Cre17.g708600 | No alias | Histone superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Cre17.g711750 | No alias | Histone superfamily protein | 0.02 | Orthogroups_2024-Update | |
| GRMZM2G141432 | No alias | Histone superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.12G065100 | No alias | Histone superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.13G132100 | No alias | Histone superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.19G173400 | No alias | Histone superfamily protein | 0.04 | Orthogroups_2024-Update | |
| HORVU1Hr1G078480.6 | No alias | histone *(H2B) | 0.04 | Orthogroups_2024-Update | |
| HORVU3Hr1G013680.1 | No alias | histone *(H2B) | 0.04 | Orthogroups_2024-Update | |
| HORVU3Hr1G086610.4 | No alias | histone *(H2B) | 0.03 | Orthogroups_2024-Update | |
| HORVU4Hr1G009040.2 | No alias | histone *(H2B) | 0.03 | Orthogroups_2024-Update | |
| HORVU5Hr1G094500.1 | No alias | histone *(H2B) | 0.03 | Orthogroups_2024-Update | |
| HORVU7Hr1G110310.1 | No alias | histone *(H2B) | 0.03 | Orthogroups_2024-Update | |
| MA_10435143g0020 | No alias | (at3g45980 : 145.0) Encodes a histone 2B (H2B) protein.... | 0.04 | Orthogroups_2024-Update | |
| Mp4g13450.1 | No alias | histone (H2B) | 0.02 | Orthogroups_2024-Update | |
| PSME_00041882-RA | No alias | (at5g22880 : 162.0) Encodes a histone 2B (H2B) protein.... | 0.04 | Orthogroups_2024-Update | |
| Solyc02g038690 | No alias | Histone H2B (AHRD V3.3 *** K4B5W3_SOLLC) | 0.02 | Orthogroups_2024-Update | |
| Solyc05g055440 | No alias | Histone H2B (AHRD V3.3 *** K4C2M0_SOLLC) | 0.02 | Orthogroups_2024-Update | |
| Solyc06g074790 | No alias | Histone H2B (AHRD V3.3 *** M1AAN4_SOLTU) | 0.02 | Orthogroups_2024-Update | |
| Solyc06g075800 | No alias | Histone H2B (AHRD V3.3 *** K4C9U5_SOLLC) | 0.02 | Orthogroups_2024-Update | |
| Solyc11g007920 | No alias | Histone H2B (AHRD V3.3 *** K4D553_SOLLC) | 0.02 | Orthogroups_2024-Update | |
| Solyc11g007930 | No alias | Histone H2B (AHRD V3.3 *** K4D554_SOLLC) | 0.02 | Orthogroups_2024-Update | |
| Sopen12g006850 | No alias | Core histone H2A/H2B/H3/H4 | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000786 | nucleosome | IEA | InterProScan predictions |
| MF | GO:0003677 | DNA binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR007125 | Histone_H2A/H2B/H3 | 6 | 117 |
| No external refs found! |