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  5. MA_93495g0010

MA_93495g0010


Description : (at4g05320 : 654.0) One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.; polyubiquitin 10 (UBQ10); CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 4 (TAIR:AT5G20620.1); Has 32669 Blast hits to 7219 proteins in 726 species: Archae - 0; Bacteria - 99; Metazoa - 15287; Fungi - 3767; Plants - 6623; Viruses - 815; Other Eukaryotes - 6078 (source: NCBI BLink). & (p69326|ubiq_wheat : 150.0) Ubiquitin - Triticum aestivum (Wheat) & (reliability: 1308.0) & (original description: no original description)


Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_93495g0010
Cluster HCCA clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
173723 No alias polyubiquitin 10 0.03 Orthogroups_2024-Update
227280 No alias polyubiquitin 10 0.02 Orthogroups_2024-Update
228943 No alias polyubiquitin 10 0.04 Orthogroups_2024-Update
93613 No alias related to ubiquitin 1 0.02 Orthogroups_2024-Update
Bradi2g12323 No alias ubiquitin extension protein 1 0.03 Orthogroups_2024-Update
Bradi4g13202 No alias polyubiquitin 10 0.03 Orthogroups_2024-Update
Brara.A02946.1 No alias UBQ ubiquitin-fold protein 0.03 Orthogroups_2024-Update
Cre11.g467567 No alias polyubiquitin 10 0.01 Orthogroups_2024-Update
HORVU6Hr1G026200.5 No alias UBQ ubiquitin-fold protein 0.02 Orthogroups_2024-Update
HORVU6Hr1G026260.1 No alias UBQ ubiquitin-fold protein 0.03 Orthogroups_2024-Update
LOC_Os08g08790 No alias ubiquitin family protein, putative, expressed 0.02 Orthogroups_2024-Update
Pp1s88_142V6 No alias hexaubiquitin protein 0.03 Orthogroups_2024-Update
Sobic.004G050100.1 No alias UBQ ubiquitin-fold protein 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006812 cation transport IEP Predicted GO
MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
MF GO:0046873 metal ion transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 79 150
IPR000626 Ubiquitin_dom 303 339
IPR000626 Ubiquitin_dom 231 302
IPR000626 Ubiquitin_dom 3 74
IPR000626 Ubiquitin_dom 155 226
No external refs found!