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Description : (at3g49170 : 527.0) embryo defective 2261 (EMB2261); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48732 Blast hits to 14187 proteins in 273 species: Archae - 0; Bacteria - 16; Metazoa - 205; Fungi - 147; Plants - 47588; Viruses - 0; Other Eukaryotes - 776 (source: NCBI BLink). & (q76c99|rf1_orysa : 134.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1054.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Picea release: MA_9384g0020 | |
| Cluster | HCCA clusters: Cluster_46 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| At1g03510 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | Orthogroups_2024-Update | |
| Bradi1g20737 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Bradi2g25480 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Bradi2g55230 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| HORVU7Hr1G084980.2 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| PSME_00001942-RA | No alias | (at3g57430 : 689.0) Encodes a chloroplast RNA editing... | 0.04 | Orthogroups_2024-Update | |
| PSME_00004170-RA | No alias | (at2g27610 : 399.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| PSME_00005130-RA | No alias | (at4g33990 : 552.0) embryo defective 2758 (EMB2758);... | 0.03 | Orthogroups_2024-Update | |
| PSME_00007759-RA | No alias | (at3g12770 : 656.0) Encodes a pentatricopeptide repeat... | 0.06 | Orthogroups_2024-Update | |
| PSME_00011508-RA | No alias | (at2g27610 : 744.0) Tetratricopeptide repeat (TPR)-like... | 0.06 | Orthogroups_2024-Update | |
| PSME_00012885-RA | No alias | (at1g08070 : 603.0) Encodes a chloroplast RNA editing... | 0.04 | Orthogroups_2024-Update | |
| PSME_00016247-RA | No alias | (at3g12770 : 627.0) Encodes a pentatricopeptide repeat... | 0.03 | Orthogroups_2024-Update | |
| PSME_00024580-RA | No alias | (at4g02750 : 440.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| PSME_00028519-RA | No alias | (at2g22070 : 606.0) pentatricopeptide (PPR)... | 0.04 | Orthogroups_2024-Update | |
| PSME_00037063-RA | No alias | (at4g18750 : 572.0) Encodes a pentatricopeptide (PPR)... | 0.04 | Orthogroups_2024-Update | |
| PSME_00037497-RA | No alias | (at4g13650 : 692.0) Pentatricopeptide repeat (PPR)... | 0.02 | Orthogroups_2024-Update | |
| PSME_00041541-RA | No alias | (at3g12770 : 598.0) Encodes a pentatricopeptide repeat... | 0.05 | Orthogroups_2024-Update | |
| PSME_00048766-RA | No alias | (at4g02750 : 577.0) Tetratricopeptide repeat (TPR)-like... | 0.02 | Orthogroups_2024-Update | |
| PSME_00056168-RA | No alias | (at3g61170 : 686.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| Pp1s169_110V6 | No alias | T12J13.14; pentatricopeptide (PPR) repeat-containing... | 0.02 | Orthogroups_2024-Update | |
| Seita.1G076000.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Seita.1G205700.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Seita.4G225800.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.002G384800.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sopen02g025050 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen07g022420 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen11g001900 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update | |
| Sopen11g001910 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
| Sopen11g024970 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0006072 | glycerol-3-phosphate metabolic process | IEP | Predicted GO |
| BP | GO:0046168 | glycerol-3-phosphate catabolic process | IEP | Predicted GO |
| MF | GO:0051287 | NAD binding | IEP | Predicted GO |
| BP | GO:0052646 | alditol phosphate metabolic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 62 | 92 |
| IPR002885 | Pentatricopeptide_repeat | 703 | 732 |
| IPR002885 | Pentatricopeptide_repeat | 504 | 526 |
| IPR002885 | Pentatricopeptide_repeat | 302 | 327 |
| IPR002885 | Pentatricopeptide_repeat | 330 | 357 |
| IPR002885 | Pentatricopeptide_repeat | 638 | 661 |
| IPR002885 | Pentatricopeptide_repeat | 126 | 173 |
| IPR002885 | Pentatricopeptide_repeat | 227 | 274 |
| IPR002885 | Pentatricopeptide_repeat | 530 | 576 |
| IPR002885 | Pentatricopeptide_repeat | 429 | 476 |
| IPR032867 | DYW_dom | 736 | 792 |
| No external refs found! |