- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : (at4g02750 : 714.0) Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09410.1); Has 56089 Blast hits to 14902 proteins in 275 species: Archae - 0; Bacteria - 15; Metazoa - 173; Fungi - 123; Plants - 55165; Viruses - 0; Other Eukaryotes - 613 (source: NCBI BLink). & (q76c99|rf1_orysa : 150.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1428.0) & (original description: no original description)
Gene families : OG_42_0012848 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0012848_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Picea release: MA_9404399g0010 | |
| Cluster | HCCA clusters: Cluster_61 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0005975 | carbohydrate metabolic process | IEP | Predicted GO |
| BP | GO:0005984 | disaccharide metabolic process | IEP | Predicted GO |
| BP | GO:0005985 | sucrose metabolic process | IEP | Predicted GO |
| BP | GO:0006631 | fatty acid metabolic process | IEP | Predicted GO |
| BP | GO:0006633 | fatty acid biosynthetic process | IEP | Predicted GO |
| BP | GO:0008037 | cell recognition | IEP | Predicted GO |
| BP | GO:0009311 | oligosaccharide metabolic process | IEP | Predicted GO |
| MF | GO:0016157 | sucrose synthase activity | IEP | Predicted GO |
| BP | GO:0022414 | reproductive process | IEP | Predicted GO |
| BP | GO:0044262 | cellular carbohydrate metabolic process | IEP | Predicted GO |
| MF | GO:0046527 | glucosyltransferase activity | IEP | Predicted GO |
| BP | GO:0048544 | recognition of pollen | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 370 | 402 |
| IPR002885 | Pentatricopeptide_repeat | 24 | 52 |
| IPR032867 | DYW_dom | 578 | 633 |
| IPR002885 | Pentatricopeptide_repeat | 120 | 148 |
| IPR002885 | Pentatricopeptide_repeat | 89 | 118 |
| IPR002885 | Pentatricopeptide_repeat | 151 | 180 |
| IPR002885 | Pentatricopeptide_repeat | 244 | 274 |
| IPR002885 | Pentatricopeptide_repeat | 182 | 210 |
| IPR002885 | Pentatricopeptide_repeat | 276 | 303 |
| IPR002885 | Pentatricopeptide_repeat | 545 | 574 |
| IPR002885 | Pentatricopeptide_repeat | 479 | 503 |
| IPR002885 | Pentatricopeptide_repeat | 213 | 243 |
| IPR002885 | Pentatricopeptide_repeat | 304 | 351 |
| IPR002885 | Pentatricopeptide_repeat | 405 | 451 |
| IPR002885 | Pentatricopeptide_repeat | 56 | 88 |
| No external refs found! |