Description : (at1g11290 : 612.0) Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.; CHLORORESPIRATORY REDUCTION22 (CRR22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48258 Blast hits to 14436 proteins in 289 species: Archae - 1; Bacteria - 2; Metazoa - 166; Fungi - 164; Plants - 47192; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink). & (q76c99|rf1_orysa : 132.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1224.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_94165g0010 | |
Cluster | HCCA clusters: Cluster_106 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
106861 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
150748 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
74762 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
82255 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
At5g66520 | No alias | Pentatricopeptide repeat-containing protein At5g66520... | 0.04 | Orthogroups_2024-Update | |
Bradi1g05610 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi1g59070 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Bradi2g32290 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Bradi3g59950 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Brara.F01619.1 | No alias | RNA editing factor *(ECD1) | 0.04 | Orthogroups_2024-Update | |
Brara.I01685.1 | No alias | RNA editing factor *(PGN) | 0.03 | Orthogroups_2024-Update | |
Glyma.01G234100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.06G161900 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.11G006200 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
HORVU6Hr1G027560.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
LOC_Os02g50280 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
PSME_00000625-RA | No alias | (at3g09040 : 618.0) Pentatricopeptide repeat (PPR)... | 0.05 | Orthogroups_2024-Update | |
PSME_00001942-RA | No alias | (at3g57430 : 689.0) Encodes a chloroplast RNA editing... | 0.03 | Orthogroups_2024-Update | |
PSME_00002641-RA | No alias | (at1g11290 : 548.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
PSME_00004102-RA | No alias | (at4g02750 : 508.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
PSME_00005432-RA | No alias | (at1g11290 : 677.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
PSME_00007181-RA | No alias | (at3g03580 : 567.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
PSME_00015835-RA | No alias | (at4g01030 : 610.0) pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00016247-RA | No alias | (at3g12770 : 627.0) Encodes a pentatricopeptide repeat... | 0.04 | Orthogroups_2024-Update | |
PSME_00016248-RA | No alias | (at3g12770 : 631.0) Encodes a pentatricopeptide repeat... | 0.04 | Orthogroups_2024-Update | |
PSME_00023451-RA | No alias | (at1g11290 : 535.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
PSME_00025196-RA | No alias | (at3g03580 : 681.0) Tetratricopeptide repeat (TPR)-like... | 0.05 | Orthogroups_2024-Update | |
PSME_00031955-RA | No alias | (at1g11290 : 710.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
PSME_00035769-RA | No alias | (at4g13650 : 702.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00041541-RA | No alias | (at3g12770 : 598.0) Encodes a pentatricopeptide repeat... | 0.04 | Orthogroups_2024-Update | |
PSME_00042924-RA | No alias | (at3g57430 : 662.0) Encodes a chloroplast RNA editing... | 0.04 | Orthogroups_2024-Update | |
PSME_00046650-RA | No alias | (at4g21300 : 573.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
PSME_00047047-RA | No alias | (at1g11290 : 654.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
PSME_00047081-RA | No alias | (at1g18485 : 652.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00051353-RA | No alias | (at4g13650 : 695.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00051765-RA | No alias | (at3g03580 : 693.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
PSME_00055422-RA | No alias | (at2g13600 : 420.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00056121-RA | No alias | (at4g13650 : 672.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
PSME_00056507-RA | No alias | (at1g16480 : 719.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
Potri.004G124400 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.013G058900 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.017G091600 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Seita.5G242100.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.002G065200.1 | No alias | RNA editing factor *(CRR28) | 0.03 | Orthogroups_2024-Update | |
Sobic.002G292300.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.003G277100.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.004G199400.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.005G210700.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.006G114300.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Solyc03g114660 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
Solyc11g065250 | No alias | Pentatricopeptide repeat superfamily protein (AHRD V3.3... | 0.02 | Orthogroups_2024-Update | |
Sopen05g018650 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen10g006390 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000295 | adenine nucleotide transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0003690 | double-stranded DNA binding | IEP | Predicted GO |
MF | GO:0003951 | NAD+ kinase activity | IEP | Predicted GO |
MF | GO:0004325 | ferrochelatase activity | IEP | Predicted GO |
MF | GO:0005346 | purine ribonucleotide transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0005347 | ATP transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0005471 | ATP:ADP antiporter activity | IEP | Predicted GO |
BP | GO:0006352 | DNA-templated transcription, initiation | IEP | Predicted GO |
BP | GO:0006739 | NADP metabolic process | IEP | Predicted GO |
BP | GO:0006741 | NADP biosynthetic process | IEP | Predicted GO |
BP | GO:0006766 | vitamin metabolic process | IEP | Predicted GO |
BP | GO:0006767 | water-soluble vitamin metabolic process | IEP | Predicted GO |
BP | GO:0006771 | riboflavin metabolic process | IEP | Predicted GO |
BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | Predicted GO |
BP | GO:0006783 | heme biosynthetic process | IEP | Predicted GO |
BP | GO:0006862 | nucleotide transport | IEP | Predicted GO |
MF | GO:0008514 | organic anion transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0008686 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity | IEP | Predicted GO |
MF | GO:0008942 | nitrite reductase [NAD(P)H] activity | IEP | Predicted GO |
BP | GO:0009110 | vitamin biosynthetic process | IEP | Predicted GO |
BP | GO:0009231 | riboflavin biosynthetic process | IEP | Predicted GO |
MF | GO:0015215 | nucleotide transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0015216 | purine nucleotide transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0015217 | ADP transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0015301 | anion:anion antiporter activity | IEP | Predicted GO |
MF | GO:0015605 | organophosphate ester transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0015748 | organophosphate ester transport | IEP | Predicted GO |
BP | GO:0015931 | nucleobase-containing compound transport | IEP | Predicted GO |
MF | GO:0015932 | nucleobase-containing compound transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | IEP | Predicted GO |
MF | GO:0016636 | oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor | IEP | Predicted GO |
MF | GO:0016661 | oxidoreductase activity, acting on other nitrogenous compounds as donors | IEP | Predicted GO |
MF | GO:0016829 | lyase activity | IEP | Predicted GO |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | Predicted GO |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Predicted GO |
BP | GO:0033013 | tetrapyrrole metabolic process | IEP | Predicted GO |
BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | Predicted GO |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Predicted GO |
BP | GO:0042168 | heme metabolic process | IEP | Predicted GO |
BP | GO:0042364 | water-soluble vitamin biosynthetic process | IEP | Predicted GO |
BP | GO:0042440 | pigment metabolic process | IEP | Predicted GO |
BP | GO:0042726 | flavin-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0042727 | flavin-containing compound biosynthetic process | IEP | Predicted GO |
BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
BP | GO:0046148 | pigment biosynthetic process | IEP | Predicted GO |
BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
MF | GO:0046857 | oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor | IEP | Predicted GO |
BP | GO:0051186 | cofactor metabolic process | IEP | Predicted GO |
BP | GO:0051188 | cofactor biosynthetic process | IEP | Predicted GO |
MF | GO:0051743 | red chlorophyll catabolite reductase activity | IEP | Predicted GO |
MF | GO:0098809 | nitrite reductase activity | IEP | Predicted GO |
MF | GO:0099516 | ion antiporter activity | IEP | Predicted GO |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Predicted GO |
MF | GO:1901505 | carbohydrate derivative transmembrane transporter activity | IEP | Predicted GO |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR032867 | DYW_dom | 607 | 731 |
IPR002885 | Pentatricopeptide_repeat | 281 | 329 |
IPR002885 | Pentatricopeptide_repeat | 483 | 531 |
IPR002885 | Pentatricopeptide_repeat | 181 | 224 |
IPR002885 | Pentatricopeptide_repeat | 383 | 429 |
IPR002885 | Pentatricopeptide_repeat | 256 | 280 |
IPR002885 | Pentatricopeptide_repeat | 83 | 112 |
No external refs found! |