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  5. Solyc11g005680

Solyc11g005680


Description : Ribosomal protein S13 (AHRD V3.3 *** A0A103XPA4_CYNCS)


Gene families : OG_42_0001811 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001811_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc11g005680
Cluster HCCA clusters: Cluster_116

Target Alias Description ECC score Gene Family Method Actions
267619 No alias S18 ribosomal protein 0.02 Orthogroups_2024-Update
A4A49_58029 No alias 40s ribosomal protein s18 0.03 Orthogroups_2024-Update
Cre06.g272950 No alias Ribosomal protein S13/S18 family 0.03 Orthogroups_2024-Update
GRMZM2G130544 No alias Ribosomal protein S13/S18 family 0.03 Orthogroups_2024-Update
Glyma.02G079000 No alias S18 ribosomal protein 0.02 Orthogroups_2024-Update
Glyma.10G224200 No alias Ribosomal protein S13/S18 family 0.03 Orthogroups_2024-Update
Mp1g07420.1 No alias component RPS18 of SSU proteome 0.04 Orthogroups_2024-Update
Mp5g02820.1 No alias component RPS18 of SSU proteome 0.03 Orthogroups_2024-Update
Pp1s14_433V6 No alias 40s ribosomal protein s18 0.02 Orthogroups_2024-Update
Pp1s215_71V6 No alias 40s ribosomal protein s18 0.04 Orthogroups_2024-Update
Pp1s215_81V6 No alias 40s ribosomal protein s18 0.04 Orthogroups_2024-Update
Pp1s242_94V6 No alias 40s ribosomal protein s18 0.03 Orthogroups_2024-Update
Seita.5G053700.1 No alias component *(uS13) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Sobic.001G058900.1 No alias component *(uS13) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Sobic.002G049300.1 No alias component *(uS13) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
evm.model.contig_2176.2 No alias (at4g09800 : 195.0) encodes a ribosomal protein S18C, a... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Predicted GO
BP GO:0000390 spliceosomal complex disassembly IEP Predicted GO
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
CC GO:0005684 U2-type spliceosomal complex IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0007049 cell cycle IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
BP GO:0022411 cellular component disassembly IEP Predicted GO
BP GO:0032984 protein-containing complex disassembly IEP Predicted GO
BP GO:0032988 ribonucleoprotein complex disassembly IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
CC GO:0071008 U2-type post-mRNA release spliceosomal complex IEP Predicted GO
CC GO:0071014 post-mRNA release spliceosomal complex IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001892 Ribosomal_S13 14 142
No external refs found!