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  5. MA_9989604g0010

MA_9989604g0010


Description : (at4g18750 : 575.0) Encodes a pentatricopeptide (PPR) protein involved in leaf and root development. dot4 mutants have an aberrant midgap venation pattern in juvenile leaves and cotyledons.; DEFECTIVELY ORGANIZED TRIBUTARIES 4 (DOT4); INVOLVED IN: cotyledon vascular tissue pattern formation, phloem or xylem histogenesis, leaf vascular tissue pattern formation, leaf development; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G16860.1); Has 49728 Blast hits to 14531 proteins in 279 species: Archae - 0; Bacteria - 13; Metazoa - 210; Fungi - 140; Plants - 48642; Viruses - 0; Other Eukaryotes - 723 (source: NCBI BLink). & (q76c99|rf1_orysa : 169.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1150.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_9989604g0010
Cluster HCCA clusters: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
110016 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
130453 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
At4g14820 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.04 Orthogroups_2024-Update
Bradi2g22840 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g40080 No alias mitochondrial editing factor 19 0.03 Orthogroups_2024-Update
Bradi3g43210 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi5g14000 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.07 Orthogroups_2024-Update
HORVU2Hr1G084530.3 No alias RNA editing factor *(SLO4) 0.03 Orthogroups_2024-Update
LOC_Os11g29360 No alias pentatricopeptide, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os12g36620 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
MA_440697g0010 No alias (at4g18750 : 611.0) Encodes a pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
MA_658463g0010 No alias (at4g02750 : 623.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
MA_71420g0010 No alias (at2g22070 : 548.0) pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
MA_86894g0010 No alias (at3g12770 : 643.0) Encodes a pentatricopeptide repeat... 0.05 Orthogroups_2024-Update
PSME_00002375-RA No alias (at3g03580 : 696.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00015055-RA No alias (at1g11290 : 619.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00018763-RA No alias (at1g11290 : 389.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00022688-RA No alias (at3g46790 : 282.0) Encodes a member of a PCMP (plant... 0.03 Orthogroups_2024-Update
PSME_00042881-RA No alias (at4g37170 : 685.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
Potri.008G106500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.014G097000 No alias pentatricopeptide (PPR) repeat-containing protein 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005096 GTPase activator activity IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 233 255
IPR002885 Pentatricopeptide_repeat 334 354
IPR002885 Pentatricopeptide_repeat 571 594
IPR002885 Pentatricopeptide_repeat 132 156
IPR002885 Pentatricopeptide_repeat 496 543
IPR002885 Pentatricopeptide_repeat 360 407
IPR002885 Pentatricopeptide_repeat 57 103
IPR002885 Pentatricopeptide_repeat 258 305
IPR002885 Pentatricopeptide_repeat 159 205
No external refs found!