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No description available
Gene families : OG_42_0003821 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003821_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Solanum release: Solyc01g097590 | |
| Cluster | HCCA clusters: Cluster_288 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| At3g04820 | No alias | Pseudouridine synthase family protein... | 0.04 | Orthogroups_2024-Update | |
| Bradi2g20360 | No alias | Pseudouridine synthase family protein | 0.02 | Orthogroups_2024-Update | |
| Seita.3G184700.1 | No alias | TruD-type tRNA pseudouridine synthase | 0.02 | Orthogroups_2024-Update | |
| Sopen01g041230 | No alias | tRNA pseudouridine synthase D (TruD) | 0.04 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000049 | tRNA binding | IEP | Predicted GO |
| BP | GO:0000726 | non-recombinational repair | IEP | Predicted GO |
| BP | GO:0002097 | tRNA wobble base modification | IEP | Predicted GO |
| BP | GO:0002098 | tRNA wobble uridine modification | IEP | Predicted GO |
| MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Predicted GO |
| MF | GO:0004003 | ATP-dependent DNA helicase activity | IEP | Predicted GO |
| MF | GO:0004843 | thiol-dependent ubiquitin-specific protease activity | IEP | Predicted GO |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0006302 | double-strand break repair | IEP | Predicted GO |
| BP | GO:0006303 | double-strand break repair via nonhomologous end joining | IEP | Predicted GO |
| BP | GO:0006351 | transcription, DNA-templated | IEP | Predicted GO |
| BP | GO:0006396 | RNA processing | IEP | Predicted GO |
| BP | GO:0006400 | tRNA modification | IEP | Predicted GO |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
| MF | GO:0008026 | ATP-dependent helicase activity | IEP | Predicted GO |
| MF | GO:0008094 | DNA-dependent ATPase activity | IEP | Predicted GO |
| MF | GO:0008168 | methyltransferase activity | IEP | Predicted GO |
| BP | GO:0009451 | RNA modification | IEP | Predicted GO |
| BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | Predicted GO |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Predicted GO |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Predicted GO |
| BP | GO:0034227 | tRNA thio-modification | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
| BP | GO:0051259 | protein complex oligomerization | IEP | Predicted GO |
| MF | GO:0070035 | purine NTP-dependent helicase activity | IEP | Predicted GO |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Predicted GO |
| MF | GO:0097747 | RNA polymerase activity | IEP | Predicted GO |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Predicted GO |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |