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Pp1s104_75V6


Description : 60s ribosomal protein l39


Gene families : OG_42_0002686 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002686_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s104_75V6
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
125075 No alias Ribosomal protein L39 family protein 0.06 Orthogroups_2024-Update
152207 No alias Ribosomal protein L39 family protein 0.03 Orthogroups_2024-Update
228490 No alias Ribosomal protein L39 family protein 0.04 Orthogroups_2024-Update
At2g25210 No alias Ribosomal protein L39 family protein [Source:TAIR;Acc:AT2G25210] 0.03 Orthogroups_2024-Update
At4g31985 No alias 60S ribosomal protein L39-1... 0.02 Orthogroups_2024-Update
GRMZM2G411764 No alias Ribosomal protein L39 family protein 0.07 Orthogroups_2024-Update
LOC_Os02g55370 No alias 60S ribosomal protein L39, putative, expressed 0.06 Orthogroups_2024-Update
LOC_Os06g08320 No alias 60S ribosomal protein L39, putative, expressed 0.05 Orthogroups_2024-Update
MA_92282g0010 No alias (p51426|rl39_orysa : 108.0) 60S ribosomal protein L39 -... 0.01 Orthogroups_2024-Update
PSME_00038050-RA No alias (p51426|rl39_orysa : 108.0) 60S ribosomal protein L39 -... 0.16 Orthogroups_2024-Update
Potri.006G188500 No alias Ribosomal protein L39 family protein 0.03 Orthogroups_2024-Update
Potri.018G022100 No alias Ribosomal protein L39 family protein 0.09 Orthogroups_2024-Update
Potri.018G112301 No alias Ribosomal protein L39 family protein 0.07 Orthogroups_2024-Update
Seita.1G351900.1 No alias component *(eL39) of large ribosomal-subunit (LSU) proteome 0.08 Orthogroups_2024-Update
Seita.6G104600.1 No alias component *(eL39) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Solyc12g010350 No alias 60S ribosomal protein L39 (AHRD V3.3 *** RL39_MAIZE) 0.17 Orthogroups_2024-Update
Sopen07g001180 No alias Ribosomal L39 protein 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
CC GO:0005743 mitochondrial inner membrane IEP Predicted GO
CC GO:0005750 mitochondrial respiratory chain complex III IEP Predicted GO
BP GO:0006091 generation of precursor metabolites and energy IEP Predicted GO
BP GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
CC GO:0016272 prefoldin complex IEP Predicted GO
CC GO:0019866 organelle inner membrane IEP Predicted GO
BP GO:0022900 electron transport chain IEP Predicted GO
BP GO:0022904 respiratory electron transport chain IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044455 mitochondrial membrane part IEP Predicted GO
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
CC GO:0045275 respiratory chain complex III IEP Predicted GO
CC GO:0070069 cytochrome complex IEP Predicted GO
CC GO:0070469 respiratory chain IEP Predicted GO
CC GO:0098798 mitochondrial protein complex IEP Predicted GO
CC GO:0098800 inner mitochondrial membrane protein complex IEP Predicted GO
CC GO:0098803 respiratory chain complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000077 Ribosomal_L39 9 49
No external refs found!