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  5. Pp1s118_100V6

Pp1s118_100V6


Description : glycine-rich rna-binding


Gene families : OG_42_0000107 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s118_100V6
Cluster HCCA clusters: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
A4A49_03158 No alias glycine-rich rna-binding protein 4, mitochondrial 0.02 Orthogroups_2024-Update
A4A49_27149 No alias glycine-rich rna-binding protein 6, mitochondrial 0.03 Orthogroups_2024-Update
Bradi1g25200 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Bradi2g62460 No alias glycine-rich RNA-binding protein 2 0.03 Orthogroups_2024-Update
Brara.C02431.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.11G117600 No alias cold, circadian rhythm, and rna binding 2 0.03 Orthogroups_2024-Update
Glyma.11G255000 No alias glycine-rich RNA-binding protein 2 0.03 Orthogroups_2024-Update
LOC_Os04g33810 No alias RNA recognition motif containing protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_10436424g0010 No alias (at3g26420 : 150.0) Zinc finger-containing glycine-rich ... 0.03 Orthogroups_2024-Update
MA_85849g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00047208-RA No alias (at5g61030 : 152.0) encodes a glycine-rich RNA binding... 0.02 Orthogroups_2024-Update
evm.model.contig_2015.16 No alias (q08937|roc2_nicsy : 89.4) 29 kDa ribonucleoprotein B,... 0.01 Orthogroups_2024-Update
evm.model.tig00000826.12 No alias (at3g23830 : 98.2) encodes a glycine-rich RNA binding... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0004129 cytochrome-c oxidase activity IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005740 mitochondrial envelope IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0006534 cysteine metabolic process IEP Predicted GO
BP GO:0006535 cysteine biosynthetic process from serine IEP Predicted GO
BP GO:0006563 L-serine metabolic process IEP Predicted GO
BP GO:0006790 sulfur compound metabolic process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008374 O-acyltransferase activity IEP Predicted GO
MF GO:0009001 serine O-acetyltransferase activity IEP Predicted GO
BP GO:0009069 serine family amino acid metabolic process IEP Predicted GO
BP GO:0009070 serine family amino acid biosynthetic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
MF GO:0015002 heme-copper terminal oxidase activity IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016412 serine O-acyltransferase activity IEP Predicted GO
MF GO:0016413 O-acetyltransferase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Predicted GO
MF GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
BP GO:0019344 cysteine biosynthetic process IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
CC GO:0031967 organelle envelope IEP Predicted GO
CC GO:0031975 envelope IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 47 117
No external refs found!