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  5. Pp1s136_127V6

Pp1s136_127V6


Description : dna binding


Gene families : OG_42_0002194 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002194_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s136_127V6
Cluster HCCA clusters: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
Bradi3g59560 No alias BAH domain ;TFIIS helical bundle-like domain 0.03 Orthogroups_2024-Update
Brara.K01429.1 No alias regulatory protein *(SUO) of miRNA biogenesis pathway 0.03 Orthogroups_2024-Update
GRMZM2G162859 No alias BAH domain ;TFIIS helical bundle-like domain 0.04 Orthogroups_2024-Update
Glyma.04G180100 No alias BAH domain ;TFIIS helical bundle-like domain 0.03 Orthogroups_2024-Update
Glyma.06G184600 No alias BAH domain ;TFIIS helical bundle-like domain 0.02 Orthogroups_2024-Update
LOC_Os02g50840 No alias BAH domain containing protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_10431147g0010 No alias (at3g48050 : 181.0) BAH domain ;TFIIS helical... 0.02 Orthogroups_2024-Update
PSME_00026319-RA No alias (at3g48050 : 179.0) BAH domain ;TFIIS helical... 0.04 Orthogroups_2024-Update
Potri.012G077700 No alias BAH domain ;TFIIS helical bundle-like domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR017923 TFIIS_N 356 405
No external refs found!