1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp1s13_138V6

Pp1s13_138V6


Description : 60s ribosomal protein


Gene families : OG_42_0002250 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002250_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s13_138V6
Cluster HCCA clusters: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
227399 No alias Translation protein SH3-like family protein 0.25 Orthogroups_2024-Update
A4A49_01785 No alias 60s ribosomal protein l26-1 0.07 Orthogroups_2024-Update
A4A49_64025 No alias 60s ribosomal protein l26-1 0.16 Orthogroups_2024-Update
At3g49910 No alias 60S ribosomal protein L26-1... 0.07 Orthogroups_2024-Update
At5g67510 No alias 60S ribosomal protein L26-2... 0.05 Orthogroups_2024-Update
Bradi2g06250 No alias Translation protein SH3-like family protein 0.02 Orthogroups_2024-Update
Brara.A02158.1 No alias component *(uL24) of large ribosomal-subunit (LSU) proteome 0.34 Orthogroups_2024-Update
Brara.C04297.1 No alias component *(uL24) of large ribosomal-subunit (LSU) proteome 0.15 Orthogroups_2024-Update
Brara.I03333.1 No alias component *(uL24) of large ribosomal-subunit (LSU) proteome 0.26 Orthogroups_2024-Update
Cre01.g040000 No alias Translation protein SH3-like family protein 0.36 Orthogroups_2024-Update
Glyma.01G193800 No alias Translation protein SH3-like family protein 0.09 Orthogroups_2024-Update
Glyma.11G048100 No alias Translation protein SH3-like family protein 0.21 Orthogroups_2024-Update
Glyma.13G243100 No alias Translation protein SH3-like family protein 0.07 Orthogroups_2024-Update
Glyma.13G245300 No alias Translation protein SH3-like family protein 0.13 Orthogroups_2024-Update
Glyma.15G068500 No alias Translation protein SH3-like family protein 0.11 Orthogroups_2024-Update
HORVU3Hr1G026880.1 No alias component *(uL24) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Kfl00486_0110 kfl00486_0110_v1.1 (at3g49910 : 157.0) Translation protein SH3-like family... 0.13 Orthogroups_2024-Update
MA_13141g0010 No alias (at5g67510 : 168.0) Translation protein SH3-like family... 0.06 Orthogroups_2024-Update
Mp2g12870.1 No alias component RPL26 of LSU proteome component 0.02 Orthogroups_2024-Update
PSME_00027135-RA No alias (at5g67510 : 172.0) Translation protein SH3-like family... 0.15 Orthogroups_2024-Update
Potri.005G082600 No alias Translation protein SH3-like family protein 0.06 Orthogroups_2024-Update
Potri.007G055900 No alias Translation protein SH3-like family protein 0.17 Orthogroups_2024-Update
Potri.007G085200 No alias Translation protein SH3-like family protein 0.09 Orthogroups_2024-Update
Pp1s59_51V6 No alias K9I9.7; 60S ribosomal protein L26 (RPL26B) [KO:K02898]... 0.07 Orthogroups_2024-Update
Seita.5G096600.1 No alias component *(uL24) of large ribosomal-subunit (LSU) proteome 0.28 Orthogroups_2024-Update
Sobic.003G078200.1 No alias component *(uL24) of large ribosomal-subunit (LSU) proteome 0.26 Orthogroups_2024-Update
Solyc02g064670 No alias 60S ribosomal protein L26-1 (AHRD V3.3 *** RL261_ARATH) 0.26 Orthogroups_2024-Update
Solyc02g092430 No alias 60S ribosomal protein L26-1 (AHRD V3.3 *** RL261_ARATH) 0.25 Orthogroups_2024-Update
Solyc03g044000 No alias 60S ribosomal protein L26-1 (AHRD V3.3 *** RL261_ARATH) 0.12 Orthogroups_2024-Update
Sopen02g014760 No alias KOW motif 0.27 Orthogroups_2024-Update
Sopen02g036980 No alias KOW motif 0.11 Orthogroups_2024-Update
Sopen03g007800 No alias KOW motif 0.04 Orthogroups_2024-Update
evm.model.contig_2053.5 No alias (at5g67510 : 146.0) Translation protein SH3-like family... 0.34 Orthogroups_2024-Update
evm.model.tig00000144.60 No alias (at3g49910 : 158.0) Translation protein SH3-like family... 0.35 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
CC GO:0015934 large ribosomal subunit IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005750 mitochondrial respiratory chain complex III IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022900 electron transport chain IEP Predicted GO
BP GO:0022904 respiratory electron transport chain IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044455 mitochondrial membrane part IEP Predicted GO
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
CC GO:0045275 respiratory chain complex III IEP Predicted GO
CC GO:0070069 cytochrome complex IEP Predicted GO
CC GO:0098798 mitochondrial protein complex IEP Predicted GO
CC GO:0098800 inner mitochondrial membrane protein complex IEP Predicted GO
CC GO:0098803 respiratory chain complex IEP Predicted GO
InterPro domains Description Start Stop
IPR005824 KOW 51 82
IPR005756 Ribosomal_L26/L24P_euk/arc 8 121
No external refs found!