1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp1s13_335V6

Pp1s13_335V6


Description : pentatricopeptide repeat-containing


Gene families : OG_42_0000605 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000605_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s13_335V6
Cluster HCCA clusters: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
97625 No alias alpha-amylase-like 0.03 Orthogroups_2024-Update
Cre08.g385500 No alias alpha-amylase-like 3 0.01 Orthogroups_2024-Update
LOC_Os01g51754 No alias alpha-amylase precursor, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00011482-RA No alias (p27933|amy3d_orysa : 429.0) Alpha-amylase isozyme 3D... 0.03 Orthogroups_2024-Update
PSME_00034631-RA No alias (p27933|amy3d_orysa : 495.0) Alpha-amylase isozyme 3D... 0.03 Orthogroups_2024-Update
Potri.002G014300 No alias alpha-amylase-like 2 0.02 Orthogroups_2024-Update
Sobic.002G190500.1 No alias alpha amylase 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA InterProScan predictions
MF GO:0004556 alpha-amylase activity IEA InterProScan predictions
MF GO:0005509 calcium ion binding IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005543 phospholipid binding IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
InterPro domains Description Start Stop
IPR006047 Glyco_hydro_13_cat_dom 209 496
IPR012850 A-amylase_bs_C 517 577
No external refs found!