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  5. Pp1s159_110V6

Pp1s159_110V6


Description : transcription elongation factor s-


Gene families : OG_42_0004003 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004003_tree

Sequence : coding (download), protein (download)


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    Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


    Type Description Actions
    Neighborhood Physcomitrella release: Pp1s159_110V6
    Cluster HCCA clusters: Cluster_286

    Target Alias Description ECC score Gene Family Method Actions
    PSME_00002373-RA No alias (at2g38560 : 347.0) Encodes RNA polymerase II transcript... 0.04 Orthogroups_2024-Update

    Type GO Term Name Evidence Source
    MF GO:0003676 nucleic acid binding IEA InterProScan predictions
    CC GO:0005634 nucleus IEA InterProScan predictions
    BP GO:0006351 transcription, DNA-templated IEA InterProScan predictions
    MF GO:0008270 zinc ion binding IEA InterProScan predictions
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    Type GO Term Name Evidence Source
    BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
    CC GO:0000786 nucleosome IEP Predicted GO
    MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
    MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
    BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
    BP GO:0018208 peptidyl-proline modification IEP Predicted GO
    CC GO:0032993 protein-DNA complex IEP Predicted GO
    CC GO:0044427 chromosomal part IEP Predicted GO
    CC GO:0044815 DNA packaging complex IEP Predicted GO
    InterPro domains Description Start Stop
    IPR001222 Znf_TFIIS 354 392
    IPR003618 TFIIS_cen_dom 224 341
    IPR017923 TFIIS_N 45 86
    No external refs found!