1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp1s159_110V6

Pp1s159_110V6


Description : transcription elongation factor s-


Gene families : OG_42_0004003 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004003_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s159_110V6
Cluster HCCA clusters: Cluster_286

Target Alias Description ECC score Gene Family Method Actions
PSME_00002373-RA No alias (at2g38560 : 347.0) Encodes RNA polymerase II transcript... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006351 transcription, DNA-templated IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001222 Znf_TFIIS 354 392
IPR003618 TFIIS_cen_dom 224 341
IPR017923 TFIIS_N 45 86
No external refs found!