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  5. Pp1s15_162V6

Pp1s15_162V6


Description : zinc finger


Gene families : OG_42_0000330 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000330_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s15_162V6
Cluster HCCA clusters: Cluster_160

Target Alias Description ECC score Gene Family Method Actions
Bradi4g45200 No alias zinc finger (C3HC4-type RING finger) family protein 0.02 Orthogroups_2024-Update
Brara.J01382.1 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) 0.02 Orthogroups_2024-Update
GRMZM2G141244 No alias zinc finger (C3HC4-type RING finger) family protein 0.02 Orthogroups_2024-Update
HORVU5Hr1G062860.4 No alias Unknown function 0.04 Orthogroups_2024-Update
Kfl00462_0120 kfl00462_0120_v1.1 (at4g19670 : 199.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
Pp1s18_270V6 No alias No description available 0.03 Orthogroups_2024-Update
Seita.3G152200.1 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) 0.02 Orthogroups_2024-Update
Solyc03g005970 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT3G53690.1) 0.02 Orthogroups_2024-Update
Sopen01g052260 No alias IBR domain 0.02 Orthogroups_2024-Update
Sopen06g001010 No alias IBR domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
MF GO:0008375 acetylglucosaminyltransferase activity IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002867 IBR_dom 277 329
IPR002867 IBR_dom 200 260
No external refs found!