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  5. Pp1s169_153V6

Pp1s169_153V6


Description : atcul1 (cullin 1)


Gene families : OG_42_0000877 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000877_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s169_153V6
Cluster HCCA clusters: Cluster_250

Target Alias Description ECC score Gene Family Method Actions
HORVU1Hr1G020400.19 No alias scaffold component *(CUL1) of SCF E3 ubiquitin ligase complexes 0.02 Orthogroups_2024-Update
Kfl00302_0020 kfl00302_0020_v1.1 (at4g02570 : 1106.0) Encodes a cullin that is a... 0.04 Orthogroups_2024-Update
LOC_Os05g05700 No alias cullin, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00001583-RA No alias (at4g02570 : 949.0) Encodes a cullin that is a component... 0.03 Orthogroups_2024-Update
Sobic.002G141600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sopen01g028890 No alias Cullin family 0.03 Orthogroups_2024-Update
evm.model.contig_2038.1 No alias (at4g02570 : 261.0) Encodes a cullin that is a component... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA InterProScan predictions
MF GO:0031625 ubiquitin protein ligase binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004357 glutamate-cysteine ligase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0046873 metal ion transmembrane transporter activity IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR019559 Cullin_neddylation_domain 675 737
IPR001373 Cullin_N 25 648
No external refs found!