Pp1s177_5V6

Description : loc398434 protein

Gene families : OG_42_0002666 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002666_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Physcomitrella release: Pp1s177_5V6
Cluster	HCCA clusters: Cluster_136

Target	Alias	Description	ECC score	Gene Family Method
171051	No alias	fibrillarin 2	0.03	Orthogroups_2024-Update
A4A49_36833	No alias	mediator of rna polymerase ii transcription subunit 36a	0.06	Orthogroups_2024-Update
At4g25630	No alias	Mediator of RNA polymerase II transcription subunit 36a...	0.05	Orthogroups_2024-Update
At5g52470	No alias	Probable mediator of RNA polymerase II transcription...	0.03	Orthogroups_2024-Update
Brara.A01555.1	No alias	methyltransferase component *(Nop1/fibrillarin) of...	0.07	Orthogroups_2024-Update
Brara.H01568.1	No alias	methyltransferase component *(Nop1/fibrillarin) of...	0.05	Orthogroups_2024-Update
Cre02.g077300	No alias	fibrillarin 2	0.02	Orthogroups_2024-Update
Glyma.04G200700	No alias	fibrillarin 2	0.03	Orthogroups_2024-Update
Glyma.11G237200	No alias	fibrillarin 2	0.05	Orthogroups_2024-Update
Glyma.18G020000	No alias	fibrillarin 2	0.03	Orthogroups_2024-Update
HORVU6Hr1G091860.1	No alias	methyltransferase component *(Nop1/fibrillarin) of...	0.04	Orthogroups_2024-Update
HORVU7Hr1G108780.2	No alias	methyltransferase component *(Nop1/fibrillarin) of...	0.03	Orthogroups_2024-Update
Kfl00029_0080	kfl00029_0080_v1....	(at4g25630 : 404.0) encodes a fibrillarin, a key...	0.05	Orthogroups_2024-Update
LOC_Os05g08360	No alias	rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed	0.04	Orthogroups_2024-Update
MA_124463g0010	No alias	(at4g25630 : 414.0) encodes a fibrillarin, a key...	0.05	Orthogroups_2024-Update
PSME_00028304-RA	No alias	(at5g52470 : 208.0) encodes a fibrillarin, a key...	0.02	Orthogroups_2024-Update
Potri.008G192700	No alias	fibrillarin 1	0.02	Orthogroups_2024-Update
Potri.014G086400	No alias	fibrillarin 2	0.02	Orthogroups_2024-Update
Potri.015G147500	No alias	fibrillarin 1	0.06	Orthogroups_2024-Update
Seita.1G370900.1	No alias	methyltransferase component *(Nop1/fibrillarin) of...	0.04	Orthogroups_2024-Update
Sobic.004G349700.1	No alias	methyltransferase component *(Nop1/fibrillarin) of...	0.08	Orthogroups_2024-Update
Solyc03g025270	No alias	fibrillarin 2 (AHRD V3.3 *** AT4G25630.1)	0.04	Orthogroups_2024-Update
Sopen03g004100	No alias	Fibrillarin	0.05	Orthogroups_2024-Update
evm.model.tig00001049.16	No alias	(at5g52470 : 336.0) encodes a fibrillarin, a key...	0.06	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	InterProScan predictions
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	IEA	InterProScan predictions
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003883	CTP synthase activity	IEP	Predicted GO
CC	GO:0005634	nucleus	IEP	Predicted GO
CC	GO:0005759	mitochondrial matrix	IEP	Predicted GO
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	Predicted GO
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	Predicted GO
BP	GO:0006334	nucleosome assembly	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Predicted GO
BP	GO:0016311	dephosphorylation	IEP	Predicted GO
BP	GO:0022607	cellular component assembly	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
BP	GO:0030490	maturation of SSU-rRNA	IEP	Predicted GO
MF	GO:0030515	snoRNA binding	IEP	Predicted GO
CC	GO:0031974	membrane-enclosed lumen	IEP	Predicted GO
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	Predicted GO
BP	GO:0034622	cellular protein-containing complex assembly	IEP	Predicted GO
BP	GO:0034728	nucleosome organization	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
CC	GO:0043227	membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043233	organelle lumen	IEP	Predicted GO
BP	GO:0043933	protein-containing complex subunit organization	IEP	Predicted GO
BP	GO:0065003	protein-containing complex assembly	IEP	Predicted GO
BP	GO:0065004	protein-DNA complex assembly	IEP	Predicted GO
CC	GO:0070013	intracellular organelle lumen	IEP	Predicted GO
BP	GO:0070070	proton-transporting V-type ATPase complex assembly	IEP	Predicted GO
BP	GO:0070071	proton-transporting two-sector ATPase complex assembly	IEP	Predicted GO
BP	GO:0070072	vacuolar proton-transporting V-type ATPase complex assembly	IEP	Predicted GO
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Predicted GO
BP	GO:0071840	cellular component organization or biogenesis	IEP	Predicted GO
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Predicted GO
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000692	Fibrillarin	76	303

External Links

No external refs found!

Pp1s177_5V6

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation