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  5. Pp1s183_52V6

Pp1s183_52V6


Description : hypothetical protein [Oryza sativa (japonica cultivar-group)]


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s183_52V6
Cluster HCCA clusters: Cluster_254

Target Alias Description ECC score Gene Family Method Actions
96927 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
At1g16480 No alias Tetratricopeptide repeat (TPR)-like superfamily protein... 0.02 Orthogroups_2024-Update
At4g02750 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Orthogroups_2024-Update
Bradi1g00491 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi4g22564 No alias mitochondrial editing factor 22 0.02 Orthogroups_2024-Update
Brara.F02153.1 No alias RNA editing factor *(MEF32) 0.03 Orthogroups_2024-Update
Glyma.02G160400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G183900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os03g63510 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g39410 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g06070 No alias expressed protein 0.02 Orthogroups_2024-Update
MA_10429043g0020 No alias (at4g18750 : 616.0) Encodes a pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
MA_6413g0010 No alias (at4g18750 : 192.0) Encodes a pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
MA_87646g0010 No alias (at3g02330 : 723.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00003163-RA No alias (at3g23330 : 192.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00017380-RA No alias (at2g27610 : 683.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00024868-RA No alias (at1g11290 : 684.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00026227-RA No alias (at1g11290 : 692.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00056826-RA No alias (at2g13600 : 495.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
Potri.002G237100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.003G088600 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
Sopen10g003810 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen10g030830 No alias PPR repeat 0.02 Orthogroups_2024-Update
evm.model.contig_2421.9 No alias (at5g39710 : 153.0) EMBRYO DEFECTIVE 2745 (EMB2745);... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Predicted GO
MF GO:0015035 protein disulfide oxidoreductase activity IEP Predicted GO
MF GO:0015036 disulfide oxidoreductase activity IEP Predicted GO
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Predicted GO
CC GO:0031248 protein acetyltransferase complex IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
CC GO:0043189 H4/H2A histone acetyltransferase complex IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:1902493 acetyltransferase complex IEP Predicted GO
CC GO:1902562 H4 histone acetyltransferase complex IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 672 720
IPR002885 Pentatricopeptide_repeat 470 517
IPR002885 Pentatricopeptide_repeat 773 820
IPR002885 Pentatricopeptide_repeat 268 314
IPR002885 Pentatricopeptide_repeat 368 416
IPR002885 Pentatricopeptide_repeat 570 618
IPR002885 Pentatricopeptide_repeat 237 262
IPR002885 Pentatricopeptide_repeat 444 469
IPR002885 Pentatricopeptide_repeat 912 942
IPR002885 Pentatricopeptide_repeat 847 871
IPR032867 DYW_dom 946 1070
No external refs found!