Solyc11g020760


Description : DEAD/DEAH box RNA helicase family protein (AHRD V3.3 *-* AT1G35530.3)


Gene families : OG_42_0000411 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000411_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc11g020760
Cluster HCCA clusters: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G035168 No alias DEAD/DEAH box RNA helicase family protein 0.03 Orthogroups_2024-Update
Potri.013G110232 No alias DEAD/DEAH box RNA helicase family protein 0.02 Orthogroups_2024-Update
Seita.8G057700.1 No alias DNA translocase component *(FANCM) of FANCM-MHF DNA... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
MF GO:0016787 hydrolase activity IEA InterProScan predictions
Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
MF GO:0008146 sulfotransferase activity IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
InterPro domains Description Start Stop
IPR006935 Helicase/UvrB_N 139 235
No external refs found!