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  5. Pp1s198_172V6

Pp1s198_172V6


Description : contains ESTs C72821(E2325),AU085902(E2325) similar to Arabidopsis thaliana protein YUP8H12R.13 unknown protein [Oryza sativa (japonica cultivar-group)]


Gene families : OG_42_0000396 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000396_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s198_172V6
Cluster HCCA clusters: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
HORVU1Hr1G008330.5 No alias methylation reader *(ECT) 0.03 Orthogroups_2024-Update
PSME_00030394-RA No alias (at3g13060 : 178.0) evolutionarily conserved C-terminal... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
BP GO:0006072 glycerol-3-phosphate metabolic process IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
BP GO:0046168 glycerol-3-phosphate catabolic process IEP Predicted GO
BP GO:0046434 organophosphate catabolic process IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
BP GO:0052646 alditol phosphate metabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR015940 UBA 123 156
IPR007275 YTH_domain 661 802
IPR000626 Ubiquitin_dom 3 76
No external refs found!