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  5. Pp1s199_83V6

Pp1s199_83V6


Description : MDC11.13; transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]


Gene families : OG_42_0001770 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001770_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s199_83V6
Cluster HCCA clusters: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
Bradi3g56517 No alias varicose-related 0.02 Orthogroups_2024-Update
Glyma.09G016800 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Orthogroups_2024-Update
HORVU7Hr1G045250.3 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os02g49090 No alias WD domain, G-beta repeat domain containing protein, expressed 0.02 Orthogroups_2024-Update
Mp3g11710.1 No alias scaffold component VCS of mRNA decapping complex 0.02 Orthogroups_2024-Update
PSME_00010984-RA No alias (at3g13300 : 912.0) Encodes VCS (VARICOSE). Involved... 0.02 Orthogroups_2024-Update
Potri.001G469500 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.016G002100 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Orthogroups_2024-Update
Pp1s124_170V6 No alias MDC11.13; transducin family protein / WD-40 repeat... 0.02 Orthogroups_2024-Update
Seita.1G300800.1 No alias scaffold component *(VCS) of mRNA decapping complex 0.02 Orthogroups_2024-Update
Sobic.004G256500.1 No alias scaffold component *(VCS) of mRNA decapping complex 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
MF GO:1901567 fatty acid derivative binding IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR032401 EDC4_WD40 265 584
No external refs found!