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  5. Pp1s219_42V6

Pp1s219_42V6


Description : predicted protein [Populus trichocarpa]


Gene families : OG_42_0008034 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008034_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s219_42V6
Cluster HCCA clusters: Cluster_225

Target Alias Description ECC score Gene Family Method Actions
HORVU1Hr1G042140.4 No alias Unknown function 0.03 Orthogroups_2024-Update
Mp4g17070.1 No alias no hits & (original description: none) 0.02 Orthogroups_2024-Update
Seita.9G249500.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP Predicted GO
CC GO:0000502 proteasome complex IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
MF GO:0004725 protein tyrosine phosphatase activity IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006470 protein dephosphorylation IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
MF GO:0008417 fucosyltransferase activity IEP Predicted GO
BP GO:0009143 nucleoside triphosphate catabolic process IEP Predicted GO
BP GO:0009894 regulation of catabolic process IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
CC GO:0035658 Mon1-Ccz1 complex IEP Predicted GO
BP GO:0042176 regulation of protein catabolic process IEP Predicted GO
CC GO:0044440 endosomal part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Predicted GO
BP GO:0051246 regulation of protein metabolic process IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
CC GO:1905368 peptidase complex IEP Predicted GO
CC GO:1905369 endopeptidase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR024964 CTLH/CRA 553 641
IPR024964 CTLH/CRA 86 224
No external refs found!