1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp1s223_128V6

Pp1s223_128V6


Description : MPN9.20; zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana]


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s223_128V6
Cluster HCCA clusters: Cluster_240

Target Alias Description ECC score Gene Family Method Actions
Brara.B00623.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G123212 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.01G048700 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G046250.24 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Kfl00113_0130 kfl00113_0130_v1.1 (at5g20910 : 134.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
MA_110029g0010 No alias (at1g55530 : 173.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
Potri.008G087200 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Seita.2G401300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.007G224300.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
MF GO:1901567 fatty acid derivative binding IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR039525 RNF126-like_zinc-ribbon 6 38
IPR001841 Znf_RING 243 285
No external refs found!