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  5. Pp1s223_38V6

Pp1s223_38V6


Description : alpha expansin xpa5


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s223_38V6
Cluster HCCA clusters: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
174522 No alias expansin A8 0.02 Orthogroups_2024-Update
A4A49_26789 No alias expansin-a3 0.03 Orthogroups_2024-Update
A4A49_38718 No alias expansin-a7 0.02 Orthogroups_2024-Update
A4A49_64370 No alias expansin-a1 0.02 Orthogroups_2024-Update
At3g15370 No alias Expansin 12 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSN2] 0.02 Orthogroups_2024-Update
At5g39280 No alias Expansin-A23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL79] 0.03 Orthogroups_2024-Update
Bradi1g61190 No alias expansin A15 0.02 Orthogroups_2024-Update
Brara.C02025.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Brara.C02080.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Brara.D02404.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Brara.E00745.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Brara.I03144.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Brara.J02891.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Glyma.06G143300 No alias expansin A8 0.02 Orthogroups_2024-Update
LOC_Os02g16730 No alias expansin precursor, putative, expressed 0.01 Orthogroups_2024-Update
MA_134592g0010 No alias (q40636|expa2_orysa : 350.0) Expansin-A2 precursor... 0.02 Orthogroups_2024-Update
MA_4979g0010 No alias (q40636|expa2_orysa : 406.0) Expansin-A2 precursor... 0.02 Orthogroups_2024-Update
Mp2g18610.1 No alias alpha-class expansin 0.04 Orthogroups_2024-Update
Mp3g10160.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
PSME_00000399-RA No alias (q7xud0|exp10_orysa : 316.0) Expansin-A10 precursor... 0.02 Orthogroups_2024-Update
PSME_00006590-RA No alias (at2g40610 : 387.0) member of Alpha-Expansin Gene... 0.04 Orthogroups_2024-Update
PSME_00018431-RA No alias (at2g40610 : 390.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
PSME_00025836-RA No alias (at2g40610 : 399.0) member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
PSME_00029310-RA No alias (at1g26770 : 386.0) Encodes an expansin. Naming... 0.05 Orthogroups_2024-Update
PSME_00051817-RA No alias (at1g20190 : 379.0) member of Alpha-Expansin Gene... 0.04 Orthogroups_2024-Update
Potri.005G244100 No alias expansin 11 0.02 Orthogroups_2024-Update
Potri.013G154700 No alias expansin A8 0.02 Orthogroups_2024-Update
Potri.017G092700 No alias expansin A23 0.03 Orthogroups_2024-Update
Potri.019G057500 No alias expansin A8 0.02 Orthogroups_2024-Update
Sobic.004G121900.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006812 cation transport IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
BP GO:0043085 positive regulation of catalytic activity IEP Predicted GO
BP GO:0044093 positive regulation of molecular function IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
BP GO:0048519 negative regulation of biological process IEP Predicted GO
BP GO:0050790 regulation of catalytic activity IEP Predicted GO
BP GO:0065009 regulation of molecular function IEP Predicted GO
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 169 248
IPR009009 RlpA-like_DPBB 75 158
No external refs found!