1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp1s223_99V6

Pp1s223_99V6


Description : chromodomain helicase dna binding protein 5


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s223_99V6
Cluster HCCA clusters: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
155996 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Orthogroups_2024-Update
440203 No alias chromatin-remodeling protein 11 0.02 Orthogroups_2024-Update
A4A49_40832 No alias atp-dependent dna helicase ddm1 0.03 Orthogroups_2024-Update
At5g44800 No alias PKR1 [Source:UniProtKB/TrEMBL;Acc:A0A178UKW2] 0.03 Orthogroups_2024-Update
Bradi1g18910 No alias chromatin remodeling 5 0.02 Orthogroups_2024-Update
Brara.J01708.1 No alias ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.02 Orthogroups_2024-Update
Glyma.07G250700 No alias chromatin remodeling factor17 0.02 Orthogroups_2024-Update
Glyma.07G252100 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Orthogroups_2024-Update
Glyma.11G004100 No alias Homeotic gene regulator 0.02 Orthogroups_2024-Update
HORVU3Hr1G012850.1 No alias ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.02 Orthogroups_2024-Update
PSME_00000429-RA No alias (at2g28290 : 480.0) Encodes a SWI2/SNF2-like protein in... 0.03 Orthogroups_2024-Update
PSME_00009907-RA No alias (at2g25170 : 144.0) Encodes a SWI/SWF nuclear-localized... 0.03 Orthogroups_2024-Update
Potri.010G019150 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Orthogroups_2024-Update
Seita.6G108300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G109700.1 No alias chromatin remodeling factor *(DDM1) 0.02 Orthogroups_2024-Update
Sobic.002G404700.1 No alias CHD1-type chromatin remodeling factor *(CHR5) &... 0.02 Orthogroups_2024-Update
Sobic.010G065300.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.02 Orthogroups_2024-Update
Solyc02g062780 No alias chromatin remodeling 1 (AHRD V3.3 *** AT5G66750.1) 0.02 Orthogroups_2024-Update
Solyc02g068560 No alias CHD3-type chromatin-remodeling factor PICKLE (AHRD V3.3... 0.02 Orthogroups_2024-Update
evm.model.tig00021623.13 No alias (at2g25170 : 464.0) Encodes a SWI/SWF nuclear-localized... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
BP GO:0000271 polysaccharide biosynthetic process IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0004097 catechol oxidase activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
BP GO:0009250 glucan biosynthetic process IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Predicted GO
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predicted GO
MF GO:0035251 UDP-glucosyltransferase activity IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051273 beta-glucan metabolic process IEP Predicted GO
BP GO:0051274 beta-glucan biosynthetic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR023780 Chromo_domain 1137 1170
IPR000330 SNF2_N 1247 1525
IPR009463 DUF1087 1841 1893
IPR001650 Helicase_C 1550 1663
IPR019787 Znf_PHD-finger 587 630
IPR000313 PWWP_dom 292 387
No external refs found!