1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp1s226_119V6

Pp1s226_119V6


Description : vesicle-associated membrane


Gene families : OG_42_0000264 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000264_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s226_119V6
Cluster HCCA clusters: Cluster_162

Target Alias Description ECC score Gene Family Method Actions
LOC_Os07g14540 No alias vesicle-associated membrane protein, putative, expressed 0.02 Orthogroups_2024-Update
Sobic.002G068300.1 No alias R-type component *(VAMP721/VAMP722) of SNARE cell-plate... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA InterProScan predictions
BP GO:0016192 vesicle-mediated transport IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0003856 3-dehydroquinate synthase activity IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0009072 aromatic amino acid family metabolic process IEP Predicted GO
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP Predicted GO
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
MF GO:0050661 NADP binding IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
InterPro domains Description Start Stop
IPR001388 Synaptobrevin 128 213
IPR010908 Longin_dom 31 110
No external refs found!