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  5. Pp1s22_343V6

Pp1s22_343V6


No description available


Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s22_343V6
Cluster HCCA clusters: Cluster_233

Target Alias Description ECC score Gene Family Method Actions
A4A49_00699 No alias pre-mrna-splicing factor atp-dependent rna helicase deah7 0.02 Orthogroups_2024-Update
Bradi1g26607 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Cre24.g755347 No alias RNA helicase family protein 0.01 Orthogroups_2024-Update
LOC_Os07g32430 No alias pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.02 Orthogroups_2024-Update
PSME_00006452-RA No alias (at1g26370 : 840.0) RNA helicase family protein;... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004386 helicase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0004650 polygalacturonase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
BP GO:0006644 phospholipid metabolic process IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
BP GO:0008654 phospholipid biosynthetic process IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR001650 Helicase_C 774 904
IPR011709 DUF1605 1112 1187
IPR007502 Helicase-assoc_dom 966 1054
IPR003029 S1_domain 275 343
No external refs found!