Description : rna polymerase
Gene families : OG_42_0001092 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001092_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Physcomitrella release: Pp1s246_118V6 | |
Cluster | HCCA clusters: Cluster_184 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
At1g68990 | No alias | DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3] | 0.04 | Orthogroups_2024-Update | |
At5g15700 | No alias | DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4KB75] | 0.03 | Orthogroups_2024-Update | |
Bradi4g08880 | No alias | DNA/RNA polymerases superfamily protein | 0.02 | Orthogroups_2024-Update | |
GRMZM2G381395 | No alias | DNA/RNA polymerases superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.004G111600 | No alias | DNA/RNA polymerases superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.006G181100 | No alias | DNA/RNA polymerases superfamily protein | 0.02 | Orthogroups_2024-Update | |
Sobic.002G378100.1 | No alias | nuclear-encoded organellar RNA polymerase *(NEP) | 0.05 | Orthogroups_2024-Update | |
Sobic.010G211500.1 | No alias | nuclear-encoded organellar RNA polymerase *(NEP) | 0.02 | Orthogroups_2024-Update | |
Solyc05g010660 | No alias | DNA-directed RNA polymerase (AHRD V3.3 *** K4BXN8_SOLLC) | 0.03 | Orthogroups_2024-Update | |
Sopen05g006460 | No alias | DNA-dependent RNA polymerase | 0.09 | Orthogroups_2024-Update | |
evm.model.contig_511.3 | No alias | (at2g24120 : 493.0) SCABRA 3 (SCA3); FUNCTIONS IN:... | 0.01 | Orthogroups_2024-Update | |
evm.model.tig00021493.48 | No alias | no hits & (original description: no original description) | 0.05 | Orthogroups_2024-Update | |
evm.model.tig00021493.49 | No alias | (q8l6j3|rpo2b_tobac : 377.0) DNA-directed RNA polymerase... | 0.05 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | InterProScan predictions |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEA | InterProScan predictions |
BP | GO:0006351 | transcription, DNA-templated | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000105 | histidine biosynthetic process | IEP | Predicted GO |
MF | GO:0000166 | nucleotide binding | IEP | Predicted GO |
MF | GO:0003879 | ATP phosphoribosyltransferase activity | IEP | Predicted GO |
MF | GO:0003883 | CTP synthase activity | IEP | Predicted GO |
MF | GO:0003916 | DNA topoisomerase activity | IEP | Predicted GO |
MF | GO:0003918 | DNA topoisomerase type II (ATP-hydrolyzing) activity | IEP | Predicted GO |
MF | GO:0004497 | monooxygenase activity | IEP | Predicted GO |
MF | GO:0004499 | N,N-dimethylaniline monooxygenase activity | IEP | Predicted GO |
CC | GO:0005694 | chromosome | IEP | Predicted GO |
CC | GO:0005730 | nucleolus | IEP | Predicted GO |
BP | GO:0006220 | pyrimidine nucleotide metabolic process | IEP | Predicted GO |
BP | GO:0006221 | pyrimidine nucleotide biosynthetic process | IEP | Predicted GO |
BP | GO:0006259 | DNA metabolic process | IEP | Predicted GO |
BP | GO:0006265 | DNA topological change | IEP | Predicted GO |
BP | GO:0006354 | DNA-templated transcription, elongation | IEP | Predicted GO |
BP | GO:0006368 | transcription elongation from RNA polymerase II promoter | IEP | Predicted GO |
BP | GO:0006396 | RNA processing | IEP | Predicted GO |
BP | GO:0006400 | tRNA modification | IEP | Predicted GO |
BP | GO:0006547 | histidine metabolic process | IEP | Predicted GO |
BP | GO:0006996 | organelle organization | IEP | Predicted GO |
CC | GO:0008023 | transcription elongation factor complex | IEP | Predicted GO |
MF | GO:0008094 | DNA-dependent ATPase activity | IEP | Predicted GO |
MF | GO:0008134 | transcription factor binding | IEP | Predicted GO |
BP | GO:0016043 | cellular component organization | IEP | Predicted GO |
CC | GO:0016593 | Cdc73/Paf1 complex | IEP | Predicted GO |
MF | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | IEP | Predicted GO |
MF | GO:0016763 | transferase activity, transferring pentosyl groups | IEP | Predicted GO |
MF | GO:0016853 | isomerase activity | IEP | Predicted GO |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
CC | GO:0030684 | preribosome | IEP | Predicted GO |
CC | GO:0032040 | small-subunit processome | IEP | Predicted GO |
BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predicted GO |
MF | GO:0036094 | small molecule binding | IEP | Predicted GO |
BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
MF | GO:0043167 | ion binding | IEP | Predicted GO |
MF | GO:0043168 | anion binding | IEP | Predicted GO |
CC | GO:0043226 | organelle | IEP | Predicted GO |
CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
BP | GO:0044085 | cellular component biogenesis | IEP | Predicted GO |
CC | GO:0044424 | intracellular part | IEP | Predicted GO |
CC | GO:0044428 | nuclear part | IEP | Predicted GO |
CC | GO:0044464 | cell part | IEP | Predicted GO |
MF | GO:0048037 | cofactor binding | IEP | Predicted GO |
MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | Predicted GO |
MF | GO:0050662 | coenzyme binding | IEP | Predicted GO |
BP | GO:0051276 | chromosome organization | IEP | Predicted GO |
BP | GO:0052803 | imidazole-containing compound metabolic process | IEP | Predicted GO |
MF | GO:0061505 | DNA topoisomerase II activity | IEP | Predicted GO |
BP | GO:0071103 | DNA conformation change | IEP | Predicted GO |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | Predicted GO |
BP | GO:0072527 | pyrimidine-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0072528 | pyrimidine-containing compound biosynthetic process | IEP | Predicted GO |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Predicted GO |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Predicted GO |
No external refs found! |