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  5. Pp1s24_197V6

Pp1s24_197V6


Description : 60s ribosomal protein l37


Gene families : OG_42_0001791 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001791_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Physcomitrella release: Pp1s24_197V6
Cluster HCCA clusters: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
At1g15250 No alias 60S ribosomal protein L37-1... 0.04 Orthogroups_2024-Update
At3g16080 No alias 60S ribosomal protein L37-3... 0.02 Orthogroups_2024-Update
Brara.E01589.1 No alias component *(eL37) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Glyma.08G205500 No alias Zinc-binding ribosomal protein family protein 0.04 Orthogroups_2024-Update
HORVU6Hr1G090070.1 No alias component *(eL37) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
MA_129829g0010 No alias (at3g16080 : 128.0) Zinc-binding ribosomal protein... 0.03 Orthogroups_2024-Update
Seita.1G363500.1 No alias component *(eL37) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Sobic.001G347901.1 No alias component *(eL37) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Sobic.004G008400.1 No alias component *(eL37) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Solyc06g066660 No alias Ribosomal protein L37 (AHRD V3.3 *** M1BDD8_SOLTU) 0.03 Orthogroups_2024-Update
Sopen03g039600 No alias Ribosomal protein L37e 0.03 Orthogroups_2024-Update
Sopen06g024930 No alias Ribosomal protein L37e 0.02 Orthogroups_2024-Update
evm.model.tig00020610.80 No alias (at1g52300 : 115.0) Zinc-binding ribosomal protein... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003954 NADH dehydrogenase activity IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
CC GO:0005739 mitochondrion IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
CC GO:0035145 exon-exon junction complex IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001569 Ribosomal_L37e 2 53
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