Pp1s288_10V6

Description : 60s ribosomal protein l38

Gene families : OG_42_0001927 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001927_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Physcomitrella release: Pp1s288_10V6
Cluster	HCCA clusters: Cluster_7

Target	Alias	Description	ECC score	Gene Family Method
270247	No alias	Ribosomal L38e protein family	0.14	Orthogroups_2024-Update
A4A49_59471	No alias	60s ribosomal protein l38	0.12	Orthogroups_2024-Update
AC190609.3_FG002	No alias	Ribosomal L38e protein family	0.05	Orthogroups_2024-Update
At2g43460	No alias	60S ribosomal protein L38...	0.03	Orthogroups_2024-Update
At3g59540	No alias	60S ribosomal protein L38...	0.04	Orthogroups_2024-Update
Bradi1g25302	No alias	Ribosomal L38e protein family	0.09	Orthogroups_2024-Update
Bradi3g41837	No alias	Ribosomal L38e protein family	0.05	Orthogroups_2024-Update
Brara.C02203.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.13	Orthogroups_2024-Update
Brara.E00357.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.16	Orthogroups_2024-Update
Brara.I04090.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Cre07.g325746	No alias	Ribosomal L38e protein family	0.21	Orthogroups_2024-Update
Glyma.08G100000	No alias	Ribosomal L38e protein family	0.12	Orthogroups_2024-Update
HORVU2Hr1G043220.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Kfl00433_0040	kfl00433_0040_v1.1	(at3g59540 : 122.0) Ribosomal L38e protein family;...	0.08	Orthogroups_2024-Update
MA_20588g0010	No alias	(at3g59540 : 129.0) Ribosomal L38e protein family;...	0.08	Orthogroups_2024-Update
Mp7g14520.1	No alias	component RPL38 of LSU proteome component	0.03	Orthogroups_2024-Update
PSME_00035421-RA	No alias	(at3g59540 : 127.0) Ribosomal L38e protein family;...	0.17	Orthogroups_2024-Update
Potri.007G131800	No alias	Ribosomal L38e protein family	0.12	Orthogroups_2024-Update
Potri.010G181200	No alias	Ribosomal L38e protein family	0.09	Orthogroups_2024-Update
Potri.017G020000	No alias	Ribosomal L38e protein family	0.07	Orthogroups_2024-Update
Pp1s67_172V6	No alias	60s ribosomal protein l38	0.07	Orthogroups_2024-Update
Seita.2G274700.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.11	Orthogroups_2024-Update
Seita.2G333600.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Seita.2G344700.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Seita.6G231700.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.12	Orthogroups_2024-Update
Sobic.002G331300.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Sobic.007G184600.2	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.17	Orthogroups_2024-Update
Solyc05g055640	No alias	ARM repeat superfamily protein (AHRD V3.3 --* AT1G12930.1)	0.09	Orthogroups_2024-Update
Solyc11g008510	No alias	60S ribosomal protein L38 (AHRD V3.3 *** RL38_SOLLC)	0.14	Orthogroups_2024-Update
Sopen05g034080	No alias	Ribosomal L38e protein family	0.05	Orthogroups_2024-Update
Sopen11g004300	No alias	Ribosomal L38e protein family	0.14	Orthogroups_2024-Update
evm.model.tig00021719.6	No alias	(at3g59540 : 110.0) Ribosomal L38e protein family;...	0.15	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005750	mitochondrial respiratory chain complex III	IEP	Predicted GO
BP	GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
BP	GO:0022904	respiratory electron transport chain	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO
CC	GO:0045275	respiratory chain complex III	IEP	Predicted GO
CC	GO:0070069	cytochrome complex	IEP	Predicted GO
CC	GO:0098803	respiratory chain complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002675	Ribosomal_L38e	2	68

External Links

No external refs found!

Pp1s288_10V6

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation