1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp1s294_30V6

Pp1s294_30V6


Description : pentatricopeptide repeat-containing


Gene families : OG_42_0004203 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004203_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s294_30V6
Cluster HCCA clusters: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G059449 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Orthogroups_2024-Update
Seita.5G267700.1 No alias plastidial mRNA processing factor *(SOT5) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004665 prephenate dehydrogenase (NADP+) activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006570 tyrosine metabolic process IEP Predicted GO
BP GO:0006571 tyrosine biosynthetic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
BP GO:0006783 heme biosynthetic process IEP Predicted GO
BP GO:0006784 heme a biosynthetic process IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0008977 prephenate dehydrogenase (NAD+) activity IEP Predicted GO
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Predicted GO
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042168 heme metabolic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Predicted GO
BP GO:0046148 pigment biosynthetic process IEP Predicted GO
BP GO:0046160 heme a metabolic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 543 586
IPR002885 Pentatricopeptide_repeat 685 734
IPR002885 Pentatricopeptide_repeat 462 488
IPR002885 Pentatricopeptide_repeat 619 648
No external refs found!