Pp1s2_197V6

Description : 60s ribosomal protein l10-3

Gene families : OG_42_0001900 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001900_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Physcomitrella release: Pp1s2_197V6
Cluster	HCCA clusters: Cluster_130

Target	Alias	Description	ECC score	Gene Family Method
437527	No alias	Ribosomal protein L16p/L10e family protein	0.04	Orthogroups_2024-Update
A4A49_56503	No alias	60s ribosomal protein l10	0.05	Orthogroups_2024-Update
A4A49_60639	No alias	60s ribosomal protein l10	0.07	Orthogroups_2024-Update
At1g14320	No alias	60S ribosomal protein L10-1...	0.03	Orthogroups_2024-Update
At1g66580	No alias	60S ribosomal protein L10-3...	0.04	Orthogroups_2024-Update
Bradi2g34440	No alias	Ribosomal protein L16p/L10e family protein	0.02	Orthogroups_2024-Update
Brara.B01878.1	No alias	component *(uL16) of large ribosomal-subunit (LSU) proteome	0.02	Orthogroups_2024-Update
Brara.F00957.1	No alias	component *(uL16) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Brara.G02465.1	No alias	component *(uL16) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Brara.G02907.1	No alias	component *(uL16) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Brara.H02579.1	No alias	component *(uL16) of large ribosomal-subunit (LSU) proteome	0.02	Orthogroups_2024-Update
Cre09.g388200	No alias	senescence associated gene 24	0.04	Orthogroups_2024-Update
Glyma.02G220000	No alias	Ribosomal protein L16p/L10e family protein	0.06	Orthogroups_2024-Update
Glyma.06G140900	No alias	Ribosomal protein L16p/L10e family protein	0.06	Orthogroups_2024-Update
Glyma.14G187800	No alias	Ribosomal protein L16p/L10e family protein	0.08	Orthogroups_2024-Update
HORVU1Hr1G024710.2	No alias	component *(uL16) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
MA_17326g0010	No alias	(p93847\|rl10_solme : 399.0) 60S ribosomal protein L10...	0.03	Orthogroups_2024-Update
Mp4g23990.1	No alias	component RPL10 of LSU proteome component	0.04	Orthogroups_2024-Update
PSME_00015731-RA	No alias	(p93847\|rl10_solme : 394.0) 60S ribosomal protein L10...	0.04	Orthogroups_2024-Update
PSME_00042423-RA	No alias	(p93847\|rl10_solme : 402.0) 60S ribosomal protein L10...	0.03	Orthogroups_2024-Update
Potri.013G159600	No alias	Ribosomal protein L16p/L10e family protein	0.03	Orthogroups_2024-Update
Pp1s22_94V6	No alias	60s ribosomal protein l10-3	0.11	Orthogroups_2024-Update
Pp1s347_24V6	No alias	60s ribosomal protein l10-3	0.1	Orthogroups_2024-Update
Seita.1G023800.1	No alias	component *(uL16) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Seita.7G273300.1	No alias	component *(uL16) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Sobic.001G177800.1	No alias	component *(uL16) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
Sobic.004G103700.1	No alias	component *(uL16) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Solyc06g007520	No alias	60S ribosomal protein L10 (AHRD V3.3 *** RL10_SOLME)	0.1	Orthogroups_2024-Update
Solyc06g082650	No alias	60S ribosomal protein L10 (AHRD V3.3 *** RL10_SOLME)	0.1	Orthogroups_2024-Update
Solyc06g082670	No alias	60S ribosomal protein L10 (AHRD V3.3 *** RL10_SOLME)	0.11	Orthogroups_2024-Update
Sopen06g002430	No alias	Ribosomal protein L16p/L10e	0.13	Orthogroups_2024-Update
Sopen06g034040	No alias	Ribosomal protein L16p/L10e	0.04	Orthogroups_2024-Update
Sopen06g034060	No alias	Ribosomal protein L16p/L10e	0.05	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003684	damaged DNA binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0004129	cytochrome-c oxidase activity	IEP	Predicted GO
CC	GO:0005576	extracellular region	IEP	Predicted GO
CC	GO:0005618	cell wall	IEP	Predicted GO
CC	GO:0005622	intracellular	IEP	Predicted GO
CC	GO:0005740	mitochondrial envelope	IEP	Predicted GO
BP	GO:0006289	nucleotide-excision repair	IEP	Predicted GO
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Predicted GO
BP	GO:0006950	response to stress	IEP	Predicted GO
BP	GO:0009056	catabolic process	IEP	Predicted GO
BP	GO:0009057	macromolecule catabolic process	IEP	Predicted GO
BP	GO:0010498	proteasomal protein catabolic process	IEP	Predicted GO
MF	GO:0015002	heme-copper terminal oxidase activity	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
MF	GO:0016675	oxidoreductase activity, acting on a heme group of donors	IEP	Predicted GO
MF	GO:0016676	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor	IEP	Predicted GO
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	Predicted GO
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	Predicted GO
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Predicted GO
BP	GO:0030163	protein catabolic process	IEP	Predicted GO
CC	GO:0030312	external encapsulating structure	IEP	Predicted GO
CC	GO:0031967	organelle envelope	IEP	Predicted GO
CC	GO:0031975	envelope	IEP	Predicted GO
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEP	Predicted GO
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Predicted GO
BP	GO:0044248	cellular catabolic process	IEP	Predicted GO
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO
CC	GO:0048046	apoplast	IEP	Predicted GO
BP	GO:0050896	response to stimulus	IEP	Predicted GO
MF	GO:0051539	4 iron, 4 sulfur cluster binding	IEP	Predicted GO
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	Predicted GO
BP	GO:1901575	organic substance catabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR016180	Ribosomal_L10e/L16	12	166

External Links

No external refs found!

Pp1s2_197V6

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation