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  5. Pp1s30_297V6

Pp1s30_297V6


Description : dicer-like protein


Gene families : OG_42_0000292 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000292_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s30_297V6
Cluster HCCA clusters: Cluster_235

Target Alias Description ECC score Gene Family Method Actions
At1g01040 No alias Dicer-like 1 [Source:UniProtKB/TrEMBL;Acc:F4HQG6] 0.02 Orthogroups_2024-Update
At3g43920 No alias Endoribonuclease Dicer homolog 3... 0.02 Orthogroups_2024-Update
Bradi3g29287 No alias dicer-like 3 0.02 Orthogroups_2024-Update
Brara.J01580.1 No alias endoribonuclease (DCL4) of transacting siRNA pathway 0.02 Orthogroups_2024-Update
GRMZM2G153627 No alias dicer-like 2 0.02 Orthogroups_2024-Update
Glyma.19G254900 No alias dicer-like 2 0.02 Orthogroups_2024-Update
Glyma.19G261200 No alias dicer-like 1 0.03 Orthogroups_2024-Update
Kfl00384_0060 kfl00384_0060_v1.1 (at1g01040 : 265.0) Encodes a Dicer homolog. Dicer is a... 0.02 Orthogroups_2024-Update
LOC_Os04g43050 No alias Dicer, putative, expressed 0.02 Orthogroups_2024-Update
Potri.006G188800 No alias dicer-like 4 0.02 Orthogroups_2024-Update
Potri.010G181400 No alias dicer-like 2 0.03 Orthogroups_2024-Update
Seita.9G179100.1 No alias endoribonuclease (DCL2) of transacting siRNA pathway 0.02 Orthogroups_2024-Update
Sobic.001G180000.2 No alias endoribonuclease (DCL2) of transacting siRNA pathway 0.02 Orthogroups_2024-Update
Sopen10g001150 No alias Ribonuclease III domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0004525 ribonuclease III activity IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
BP GO:0006396 RNA processing IEA InterProScan predictions
MF GO:0016787 hydrolase activity IEA InterProScan predictions
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003725 double-stranded RNA binding IEP Predicted GO
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006497 protein lipidation IEP Predicted GO
BP GO:0006505 GPI anchor metabolic process IEP Predicted GO
BP GO:0006506 GPI anchor biosynthetic process IEP Predicted GO
BP GO:0006643 membrane lipid metabolic process IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Predicted GO
BP GO:0006664 glycolipid metabolic process IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
MF GO:0008375 acetylglucosaminyltransferase activity IEP Predicted GO
BP GO:0008654 phospholipid biosynthetic process IEP Predicted GO
BP GO:0009247 glycolipid biosynthetic process IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0045017 glycerolipid biosynthetic process IEP Predicted GO
BP GO:0046467 membrane lipid biosynthetic process IEP Predicted GO
BP GO:0046474 glycerophospholipid biosynthetic process IEP Predicted GO
BP GO:0046486 glycerolipid metabolic process IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:1903509 liposaccharide metabolic process IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR006935 Helicase/UvrB_N 200 358
IPR001650 Helicase_C 596 713
IPR014720 dsRBD_dom 1700 1757
IPR005034 Dicer_dimerisation_dom 788 876
IPR000999 RNase_III_dom 1560 1671
IPR000999 RNase_III_dom 1329 1484
IPR003100 PAZ_dom 1160 1292
No external refs found!