1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp1s313_15V6

Pp1s313_15V6


Description : 40s ribosomal protein s28


Gene families : OG_42_0002582 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002582_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s313_15V6
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
170205 No alias Nucleic acid-binding, OB-fold-like protein 0.1 Orthogroups_2024-Update
At3g10090 No alias 40S ribosomal protein S28-1... 0.02 Orthogroups_2024-Update
At5g03850 No alias 40S ribosomal protein S28-1... 0.05 Orthogroups_2024-Update
At5g64140 No alias RPS28 [Source:UniProtKB/TrEMBL;Acc:A0A178UA91] 0.11 Orthogroups_2024-Update
Bradi3g00500 No alias Nucleic acid-binding, OB-fold-like protein 0.11 Orthogroups_2024-Update
Bradi4g13890 No alias Nucleic acid-binding, OB-fold-like protein 0.07 Orthogroups_2024-Update
Bradi4g13910 No alias Nucleic acid-binding, OB-fold-like protein 0.04 Orthogroups_2024-Update
Brara.B00115.1 No alias component *(eS28) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Brara.C00134.1 No alias component *(eS28) of small ribosomal-subunit (SSU) proteome 0.17 Orthogroups_2024-Update
Brara.F02295.1 No alias component *(eS28) of small ribosomal-subunit (SSU) proteome 0.1 Orthogroups_2024-Update
Cre12.g510450 No alias Nucleic acid-binding, OB-fold-like protein 0.3 Orthogroups_2024-Update
GRMZM2G124143 No alias Nucleic acid-binding, OB-fold-like protein 0.11 Orthogroups_2024-Update
GRMZM2G455828 No alias Nucleic acid-binding, OB-fold-like protein 0.09 Orthogroups_2024-Update
Glyma.03G205800 No alias Nucleic acid-binding, OB-fold-like protein 0.02 Orthogroups_2024-Update
HORVU3Hr1G115820.3 No alias component *(eS28) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Kfl00237_0050 kfl00237_0050_v1.1 no hits & (original description: no original description) 0.06 Orthogroups_2024-Update
MA_10206328g0010 No alias (original description: no original description) 0.03 Orthogroups_2024-Update
Mp3g15160.1 No alias component RPS28 of SSU proteome 0.05 Orthogroups_2024-Update
PSME_00016821-RA No alias (p46302|rs28_maize : 97.4) 40S ribosomal protein S28 -... 0.05 Orthogroups_2024-Update
Potri.008G013200 No alias ribosomal protein S28 0.1 Orthogroups_2024-Update
Potri.010G245400 No alias ribosomal protein S28 0.07 Orthogroups_2024-Update
Sobic.001G402050.1 No alias component *(eS28) of small ribosomal-subunit (SSU) proteome 0.11 Orthogroups_2024-Update
Sobic.001G493001.1 No alias component *(eS28) of small ribosomal-subunit (SSU) proteome 0.14 Orthogroups_2024-Update
Solyc02g021400 No alias 40S ribosomal protein S28 (AHRD V3.3 *-* W9SEX7_9ROSA) 0.08 Orthogroups_2024-Update
Solyc10g078630 No alias 40S ribosomal protein S28 (AHRD V3.3 *-* W9SEX7_9ROSA) 0.11 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005743 mitochondrial inner membrane IEP Predicted GO
CC GO:0005750 mitochondrial respiratory chain complex III IEP Predicted GO
BP GO:0006091 generation of precursor metabolites and energy IEP Predicted GO
BP GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
CC GO:0016272 prefoldin complex IEP Predicted GO
CC GO:0019866 organelle inner membrane IEP Predicted GO
BP GO:0022900 electron transport chain IEP Predicted GO
BP GO:0022904 respiratory electron transport chain IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0045275 respiratory chain complex III IEP Predicted GO
CC GO:0070069 cytochrome complex IEP Predicted GO
CC GO:0070469 respiratory chain IEP Predicted GO
CC GO:0098803 respiratory chain complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000289 Ribosomal_S28e 5 64
No external refs found!