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  5. Pp1s317_10V6

Pp1s317_10V6


Description : chromodomain-helicase-dna-binding protein


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s317_10V6
Cluster HCCA clusters: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
Bradi1g10360 No alias chromatin remodeling 1 0.03 Orthogroups_2024-Update
Cre08.g377200 No alias chromatin remodeling factor CHD3 (PICKLE) 0.01 Orthogroups_2024-Update
GRMZM2G387890 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
Glyma.07G252100 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Orthogroups_2024-Update
Glyma.11G004100 No alias Homeotic gene regulator 0.02 Orthogroups_2024-Update
HORVU3Hr1G012850.1 No alias ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 Orthogroups_2024-Update
Mp4g00040.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.03 Orthogroups_2024-Update
PSME_00001593-RA No alias (at2g13370 : 1311.0) chromatin remodeling 5 (CHR5);... 0.03 Orthogroups_2024-Update
PSME_00006567-RA No alias (at5g44800 : 1157.0) chromatin remodeling 4 (CHR4);... 0.03 Orthogroups_2024-Update
PSME_00043225-RA No alias (at2g25170 : 138.0) Encodes a SWI/SWF nuclear-localized... 0.02 Orthogroups_2024-Update
Seita.5G166800.1 No alias ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.02 Orthogroups_2024-Update
evm.model.tig00020848.66 No alias (at2g44980 : 201.0) SNF2 domain-containing protein /... 0.01 Orthogroups_2024-Update
evm.model.tig00021275.25 No alias (q7g8y3|isw2_orysa : 367.0) Probable chromatin... 0.02 Orthogroups_2024-Update
evm.model.tig00021623.13 No alias (at2g25170 : 464.0) Encodes a SWI/SWF nuclear-localized... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006771 riboflavin metabolic process IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009231 riboflavin biosynthetic process IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
MF GO:0015399 primary active transmembrane transporter activity IEP Predicted GO
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Predicted GO
BP GO:0042726 flavin-containing compound metabolic process IEP Predicted GO
BP GO:0042727 flavin-containing compound biosynthetic process IEP Predicted GO
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Predicted GO
BP GO:0048519 negative regulation of biological process IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
InterPro domains Description Start Stop
IPR025260 DUF4208 1604 1697
IPR001650 Helicase_C 990 1103
IPR023780 Chromo_domain 583 632
IPR000330 SNF2_N 690 961
No external refs found!