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Description : squamosa promoter-binding
Gene families : OG_42_0000135 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000135_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Physcomitrella release: Pp1s337_52V6 | |
| Cluster | HCCA clusters: Cluster_93 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| A4A49_18444 | No alias | squamosa promoter-binding-like protein 5 | 0.05 | Orthogroups_2024-Update | |
| At1g27370 | No alias | Squamosa promoter-binding-like protein 10... | 0.04 | Orthogroups_2024-Update | |
| At2g42200 | No alias | Squamosa promoter-binding-like protein 9... | 0.02 | Orthogroups_2024-Update | |
| At5g43270 | No alias | Squamosa promoter-binding-like protein 2... | 0.02 | Orthogroups_2024-Update | |
| Bradi3g03510 | No alias | squamosa promoter binding protein-like 2 | 0.03 | Orthogroups_2024-Update | |
| Brara.G00852.1 | No alias | SBP-type transcription factor | 0.02 | Orthogroups_2024-Update | |
| Cre07.g345050 | No alias | squamosa promoter binding protein-like 10 | 0.02 | Orthogroups_2024-Update | |
| GRMZM2G101499 | No alias | squamosa promoter binding protein-like 8 | 0.02 | Orthogroups_2024-Update | |
| Glyma.02G121300 | No alias | Squamosa promoter-binding protein-like (SBP domain)... | 0.02 | Orthogroups_2024-Update | |
| Glyma.11G251500 | No alias | squamosa promoter binding protein-like 2 | 0.03 | Orthogroups_2024-Update | |
| Glyma.18G005600 | No alias | squamosa promoter binding protein-like 2 | 0.05 | Orthogroups_2024-Update | |
| HORVU2Hr1G048280.2 | No alias | SBP-type transcription factor | 0.04 | Orthogroups_2024-Update | |
| HORVU5Hr1G076380.9 | No alias | SBP-type transcription factor | 0.02 | Orthogroups_2024-Update | |
| LOC_Os04g46580 | No alias | OsSPL7 - SBP-box gene family member, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os07g32170 | No alias | OsSPL13 - SBP-box gene family member, expressed | 0.02 | Orthogroups_2024-Update | |
| PSME_00052497-RA | No alias | no hits & (original description: no original description) | 0.02 | Orthogroups_2024-Update | |
| Pp1s252_40V6 | No alias | squamosa promoter-binding | 0.04 | Orthogroups_2024-Update | |
| Seita.1G091900.1 | No alias | SBP-type transcription factor | 0.02 | Orthogroups_2024-Update | |
| Solyc01g090730 | No alias | Squamosa promoter binding protein 8b | 0.03 | Orthogroups_2024-Update | |
| Solyc05g015840 | No alias | Squamosa promoter binding protein 13 | 0.02 | Orthogroups_2024-Update | |
| Solyc10g018780 | No alias | Squamosa promoter binding protein 8a | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003677 | DNA binding | IEA | InterProScan predictions |
| CC | GO:0005634 | nucleus | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000786 | nucleosome | IEP | Predicted GO |
| MF | GO:0004556 | alpha-amylase activity | IEP | Predicted GO |
| BP | GO:0009719 | response to endogenous stimulus | IEP | Predicted GO |
| BP | GO:0009725 | response to hormone | IEP | Predicted GO |
| BP | GO:0010033 | response to organic substance | IEP | Predicted GO |
| MF | GO:0016160 | amylase activity | IEP | Predicted GO |
| MF | GO:0016846 | carbon-sulfur lyase activity | IEP | Predicted GO |
| CC | GO:0032993 | protein-DNA complex | IEP | Predicted GO |
| CC | GO:0044427 | chromosomal part | IEP | Predicted GO |
| CC | GO:0044815 | DNA packaging complex | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR004333 | SBP_dom | 47 | 120 |
| No external refs found! |