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  5. Pp1s34_415V6

Pp1s34_415V6


Description : T1D16.18; calmodulin-binding family protein [Arabidopsis thaliana]


Gene families : OG_42_0000276 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000276_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s34_415V6
Cluster HCCA clusters: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
Bradi2g37980 No alias IQ-domain 2 0.02 Orthogroups_2024-Update
Glyma.12G228200 No alias IQ-domain 10 0.03 Orthogroups_2024-Update
Potri.006G131100 No alias IQ-domain 2 0.03 Orthogroups_2024-Update
Pp1s182_50V6 No alias hypothetical protein similar to Arabidopsis thaliana... 0.03 Orthogroups_2024-Update
Solyc02g077260 No alias SUN-like protein5 0.02 Orthogroups_2024-Update
Sopen08g018490 No alias IQ calmodulin-binding motif 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR025064 DUF4005 380 439
IPR000048 IQ_motif_EF-hand-BS 124 138
IPR000048 IQ_motif_EF-hand-BS 100 118
No external refs found!