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  5. Pp1s356_21V6

Pp1s356_21V6


Description : F11F19.16; U-box domain-containing protein [Arabidopsis thaliana]


Gene families : OG_42_0000112 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000112_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s356_21V6
Cluster HCCA clusters: Cluster_192

Target Alias Description ECC score Gene Family Method Actions
A4A49_22815 No alias e3 ubiquitin-protein ligase pub23 0.03 Orthogroups_2024-Update
GRMZM2G168980 No alias plant U-box 23 0.02 Orthogroups_2024-Update
Glyma.02G242900 No alias CYS, MET, PRO, and GLY protein 1 0.02 Orthogroups_2024-Update
MA_311559g0010 No alias (at3g52450 : 124.0) Encodes a cytoplasmically localized... 0.02 Orthogroups_2024-Update
MA_684442g0010 No alias (at3g52450 : 140.0) Encodes a cytoplasmically localized... 0.02 Orthogroups_2024-Update
PSME_00049469-RA No alias (at2g35930 : 281.0) Encodes a cytoplasmically localized... 0.04 Orthogroups_2024-Update
Potri.002G070500 No alias plant U-box 29 0.02 Orthogroups_2024-Update
Potri.015G031000 No alias ARM repeat superfamily protein 0.03 Orthogroups_2024-Update
Seita.3G007400.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Solyc05g056500 No alias U-box domain-containing protein 25 (AHRD V3.3 *** W9QUC2_9ROSA) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA InterProScan predictions
BP GO:0016567 protein ubiquitination IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003919 FMN adenylyltransferase activity IEP Predicted GO
MF GO:0004097 catechol oxidase activity IEP Predicted GO
MF GO:0005534 galactose binding IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006771 riboflavin metabolic process IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009231 riboflavin biosynthetic process IEP Predicted GO
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Predicted GO
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042726 flavin-containing compound metabolic process IEP Predicted GO
BP GO:0042727 flavin-containing compound biosynthetic process IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
MF GO:0048029 monosaccharide binding IEP Predicted GO
MF GO:0051743 red chlorophyll catabolite reductase activity IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
InterPro domains Description Start Stop
IPR003613 Ubox_domain 29 100
No external refs found!